Strain Fitness in Pseudomonas putida KT2440 around PP_2448

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
2,794,055	-				+1.7
2,794,055	-				+0.7
2,794,096	+				-0.1
2,794,096	+				+0.5
2,794,096	+				-0.3
2,794,096	+				+0.1
2,794,097	-				+0.4
2,794,097	-				+0.6
2,794,097	-				+1.8
2,794,102	+				+1.6
2,794,135	-				+1.1
2,794,136	+				+0.9
2,794,137	-				+0.9
2,794,157	+				-0.5
2,794,157	+				-3.9
2,794,158	-				+1.0
2,794,253	-		PP_2447	0.13	+0.8
2,794,359	+		PP_2447	0.27	-0.2
2,794,359	+		PP_2447	0.27	-0.3
2,794,428	-		PP_2447	0.37	-0.8
2,794,430	+		PP_2447	0.37	+0.5
2,794,431	-		PP_2447	0.37	+1.2
2,794,515	+		PP_2447	0.49	-0.4
2,794,516	-		PP_2447	0.49	+0.6
2,794,521	-		PP_2447	0.49	-0.7
2,794,636	-		PP_2447	0.65	+0.1
2,794,654	-		PP_2447	0.67	+0.2
2,794,662	+		PP_2447	0.69	+0.2
2,794,891	-				+0.9
2,794,948	-				-0.7
2,795,033	-				+0.9
2,795,033	-				+1.5
2,795,033	-				+0.9
2,795,175	-		PP_2448	0.13	+0.8
2,795,176	+		PP_2448	0.13	+0.1
2,795,176	+		PP_2448	0.13	+1.0
2,795,176	+		PP_2448	0.13	+0.5
2,795,176	+		PP_2448	0.13	+0.7
2,795,176	+		PP_2448	0.13	+0.5
2,795,176	+		PP_2448	0.13	+0.4
2,795,177	-		PP_2448	0.13	+1.9
2,795,177	-		PP_2448	0.13	+0.6
2,795,177	-		PP_2448	0.13	-1.1
2,795,177	-		PP_2448	0.13	+1.3
2,795,213	-		PP_2448	0.16	+1.2
2,795,374	+		PP_2448	0.29	-0.7
2,795,374	+		PP_2448	0.29	+1.6
2,795,375	-				+1.2
2,795,426	-		PP_2448	0.33	+0.2
2,795,437	+		PP_2448	0.34	+0.9
2,795,437	+		PP_2448	0.34	+0.5
2,795,437	+				+1.6
2,795,458	+		PP_2448	0.35	+0.5
2,795,458	+		PP_2448	0.35	+2.0
2,795,458	+		PP_2448	0.35	+0.7
2,795,458	+		PP_2448	0.35	-0.5
2,795,573	-		PP_2448	0.44	+0.8
2,795,677	+		PP_2448	0.52	-1.1
2,795,677	+		PP_2448	0.52	+1.3
2,795,677	+		PP_2448	0.52	+2.0
2,795,678	-		PP_2448	0.52	+1.5
2,795,678	-		PP_2448	0.52	-0.1
2,795,678	-		PP_2448	0.52	+1.6
2,795,776	+		PP_2448	0.60	+1.0
2,795,776	+		PP_2448	0.60	+0.6
2,795,776	+		PP_2448	0.60	+0.5
2,795,777	-		PP_2448	0.60	+1.8
2,795,894	+		PP_2448	0.69	+0.4
2,795,908	-		PP_2448	0.70	-0.8
2,795,941	+		PP_2448	0.73	+1.3
2,795,941	+		PP_2448	0.73	+1.5
2,795,942	-		PP_2448	0.73	+0.1
2,795,942	-		PP_2448	0.73	+1.1
2,795,942	-		PP_2448	0.73	+1.2
2,795,942	-		PP_2448	0.73	+0.4
2,796,256	+				-0.3
2,796,257	-				+0.3
2,796,257	-				+0.3
2,796,257	-				+0.4
2,796,259	+				+0.5
2,796,260	-				+1.8
2,796,334	+				+0.9
2,796,428	-				+0.5
2,796,464	+				+0.3
2,796,465	-				+1.1
2,796,472	-				+2.7
2,796,724	-				+0.8
2,796,748	-		PP_t43	0.10	-0.7
2,796,812	+				+0.5
2,796,878	-				+1.6
2,796,878	-				-0.1
2,796,902	-				+0.6
2,796,914	+				+0.9
2,796,915	-				-0.5
2,796,942	-				+1.0
2,796,967	+				+1.1
2,796,968	-				+2.7
2,796,968	-				+0.4
2,797,144	-		PP_2449	0.34	+0.8
2,797,152	+		PP_2449	0.36	-0.2
2,797,152	+		PP_2449	0.36	+0.9
2,797,152	+		PP_2449	0.36	+0.4
2,797,153	-		PP_2449	0.36	+1.8
2,797,153	-		PP_2449	0.36	+1.0
2,797,179	+		PP_2449	0.41	+0.6
2,797,179	+		PP_2449	0.41	-0.2
2,797,217	+		PP_2449	0.47	+0.1
2,797,218	-		PP_2449	0.47	-1.4