Strain Fitness in Pseudomonas putida KT2440 around PP_2266

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
2,585,842	+				+2.9
2,585,863	+				+2.0
2,585,863	+				+2.7
2,585,863	+				+2.1
2,586,362	+				-1.2
2,586,362	+				+0.5
2,586,363	-				-1.3
2,586,393	-				-0.4
2,586,421	+				+1.7
2,586,425	+				-0.5
2,586,425	+				-0.9
2,586,425	+				+0.6
2,586,425	+				-1.4
2,586,425	+				+0.2
2,586,426	-				+0.2
2,586,426	-				-0.4
2,586,594	+				+1.0
2,586,594	+				+0.6
2,586,594	+				+0.1
2,586,595	-				+0.3
2,586,595	-				-0.1
2,586,604	+				+0.2
2,586,608	+				+1.0
2,586,609	-				+1.1
2,586,618	+				-0.2
2,586,618	+				+0.3
2,586,618	+				-0.5
2,586,619	-				-0.0
2,586,619	-				+0.0
2,586,621	+				-0.5
2,586,635	+				+0.5
2,586,641	+				+0.0
2,586,641	+				-0.6
2,586,642	-				+0.1
2,586,647	+				-0.6
2,586,647	+				+0.4
2,586,648	-				+0.6
2,586,648	-				-1.4
2,586,658	+				-0.5
2,586,659	-				+0.3
2,586,755	-				-0.7
2,586,755	-				-0.5
2,586,900	+		PP_2266	0.10	+1.3
2,586,900	+		PP_2266	0.10	-0.8
2,586,900	+		PP_2266	0.10	+0.5
2,586,900	+		PP_2266	0.10	+0.4
2,586,901	-		PP_2266	0.10	+1.0
2,586,901	-		PP_2266	0.10	-0.1
2,586,901	-		PP_2266	0.10	-0.0
2,587,072	-		PP_2266	0.17	-0.2
2,587,072	-		PP_2266	0.17	-1.2
2,587,072	-		PP_2266	0.17	+0.2
2,587,128	+		PP_2266	0.19	+1.2
2,587,129	-		PP_2266	0.19	-0.5
2,587,196	-		PP_2266	0.22	+0.1
2,587,284	+		PP_2266	0.25	+0.9
2,587,284	+		PP_2266	0.25	+1.2
2,587,359	+		PP_2266	0.28	+0.4
2,587,359	+		PP_2266	0.28	-0.4
2,587,359	+		PP_2266	0.28	+0.7
2,587,467	+		PP_2266	0.32	-0.2
2,587,467	+				+0.6
2,587,468	-		PP_2266	0.33	+0.2
2,587,494	-		PP_2266	0.34	-0.1
2,587,506	+		PP_2266	0.34	+0.7
2,587,506	+		PP_2266	0.34	-0.0
2,587,506	+		PP_2266	0.34	-0.6
2,587,507	-		PP_2266	0.34	+0.4
2,587,688	+		PP_2266	0.41	-0.0
2,587,777	-		PP_2266	0.45	+0.4
2,587,797	+		PP_2266	0.45	-0.1
2,587,797	+		PP_2266	0.45	+1.3
2,587,896	+		PP_2266	0.49	+0.3
2,588,072	-		PP_2266	0.56	+0.1
2,588,072	-		PP_2266	0.56	+0.4
2,588,072	-		PP_2266	0.56	-0.4
2,588,133	+		PP_2266	0.58	-0.1
2,588,177	+		PP_2266	0.60	+0.6
2,588,178	-		PP_2266	0.60	-0.2
2,588,178	-		PP_2266	0.60	+0.5
2,588,261	+		PP_2266	0.64	-0.0
2,588,283	+		PP_2266	0.64	-0.4
2,588,284	-		PP_2266	0.64	+0.2
2,588,379	+		PP_2266	0.68	+0.3
2,588,379	+		PP_2266	0.68	+0.3
2,588,379	+		PP_2266	0.68	-0.9
2,588,379	+		PP_2266	0.68	+0.7
2,588,380	-		PP_2266	0.68	+1.3
2,588,380	-		PP_2266	0.68	-0.2
2,588,380	-		PP_2266	0.68	+0.6
2,588,472	+		PP_2266	0.72	+0.1
2,588,488	-		PP_2266	0.72	-0.5
2,588,506	+		PP_2266	0.73	+0.5
2,588,506	+		PP_2266	0.73	+0.6
2,588,766	+		PP_2266	0.83	-0.1
2,588,766	+		PP_2266	0.83	+0.8
2,588,766	+		PP_2266	0.83	+0.5
2,588,767	-		PP_2266	0.83	-0.2
2,588,779	+		PP_2266	0.84	-0.1
2,588,897	+		PP_2266	0.88	+0.2
2,588,898	-		PP_2266	0.88	-0.1
2,588,898	-		PP_2266	0.88	-0.2
2,589,048	+				-0.7
2,589,167	-				+0.6
2,589,215	-				-0.6
2,589,449	+				-0.3
2,589,449	+				-1.1
2,589,449	+				-0.2
2,589,450	-				-1.0
2,589,450	-				-1.5
2,589,504	+				+0.9
2,589,505	-				+0.7
2,589,522	-				+0.4
2,589,522	-				-0.5
2,589,605	-				+1.2
2,589,605	-				-0.6
2,589,605	-				-0.8
2,589,605	-				+0.7
2,589,659	-				+0.4
2,589,702	-		PP_5507	0.24	-0.0
2,589,765	+		PP_5507	0.49	-0.2
2,589,766	-		PP_5507	0.49	-0.3
2,589,766	-		PP_5507	0.49	+1.5
2,589,766	-		PP_5507	0.49	-1.1
2,589,821	+		PP_5507	0.71	+0.3
2,589,821	+		PP_5507	0.71	-0.2
2,589,822	-		PP_5507	0.71	-1.4
2,589,926	+				+0.5
2,589,927	+				-0.4
2,589,928	-				+0.8
2,589,949	+				-0.3
2,589,950	-				+0.6
2,590,041	+		PP_2267	0.13	+0.2
2,590,041	+		PP_2267	0.13	+0.8
2,590,041	+		PP_2267	0.13	+0.3
2,590,041	+		PP_2267	0.13	-1.5
2,590,042	-		PP_2267	0.13	+0.5
2,590,184	-		PP_2267	0.34	+0.9
2,590,184	-		PP_2267	0.34	-0.0