Strain Fitness in Pseudomonas putida KT2440 around PP_2206

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
2,510,902	-		PP_2205	0.52	-0.5
2,511,000	+		PP_2205	0.58	+0.7
2,511,000	+		PP_2205	0.58	+0.6
2,511,000	+		PP_2205	0.58	+0.1
2,511,000	+		PP_2205	0.58	+0.4
2,511,000	+		PP_2205	0.58	-1.3
2,511,001	-		PP_2205	0.58	+2.6
2,511,001	-		PP_2205	0.58	+1.1
2,511,006	+		PP_2205	0.58	-0.7
2,511,007	-		PP_2205	0.58	-1.0
2,511,007	-		PP_2205	0.58	-0.2
2,511,147	+		PP_2205	0.66	-0.8
2,511,148	-		PP_2205	0.66	+0.3
2,511,238	-		PP_2205	0.71	-0.0
2,511,282	+		PP_2205	0.74	+0.1
2,511,283	-		PP_2205	0.74	-1.0
2,511,285	-		PP_2205	0.74	+1.4
2,511,327	+		PP_2205	0.77	-1.3
2,511,327	+		PP_2205	0.77	+0.7
2,511,327	+		PP_2205	0.77	+0.4
2,511,327	+		PP_2205	0.77	+0.3
2,511,328	-		PP_2205	0.77	-1.9
2,511,363	+		PP_2205	0.79	+0.2
2,511,364	-		PP_2205	0.79	-0.1
2,511,553	+		PP_2205	0.90	-0.6
2,511,706	+				+0.1
2,511,751	-				-0.4
2,511,799	+				+0.6
2,511,799	+				-0.3
2,511,799	+				+0.6
2,511,799	+				-0.7
2,511,800	-				+0.6
2,511,800	-				+0.5
2,511,855	+				-0.4
2,511,888	+				+0.6
2,511,888	+				-0.1
2,511,889	-				-1.5
2,511,889	-				-0.2
2,511,967	-		PP_2206	0.12	-1.2
2,512,110	+		PP_2206	0.23	+0.4
2,512,111	-		PP_2206	0.24	-0.6
2,512,119	+		PP_2206	0.24	-0.0
2,512,120	-		PP_2206	0.24	-0.2
2,512,269	+				-0.4
2,512,269	+		PP_2206	0.36	-0.6
2,512,270	-		PP_2206	0.36	-0.9
2,512,270	-		PP_2206	0.36	-0.7
2,512,271	+		PP_2206	0.36	-0.7
2,512,374	+		PP_2206	0.44	-1.2
2,512,375	-		PP_2206	0.44	-0.4
2,512,375	-		PP_2206	0.44	-0.5
2,512,375	-		PP_2206	0.44	-0.0
2,512,375	-		PP_2206	0.44	+0.1
2,512,375	-		PP_2206	0.44	-0.1
2,512,534	-				+2.2
2,512,590	+		PP_2206	0.61	-0.0
2,512,617	+		PP_2206	0.63	-0.1
2,512,617	+		PP_2206	0.63	-0.7
2,512,947	+				+1.0
2,512,947	+		PP_2206	0.89	-0.9
2,512,948	-		PP_2206	0.89	-0.4
2,513,053	-				-0.1
2,513,174	-				-0.0
2,513,245	+				+0.9
2,513,246	-				-0.0
2,513,246	-				-0.0
2,513,255	+				-0.1
2,513,256	-				+0.2
2,513,293	-				+0.2
2,513,361	-				+0.2
2,513,361	-				-0.1
2,513,550	-		PP_2207	0.26	+2.0
2,513,712	+		PP_2207	0.41	+1.7
2,513,783	+		PP_2207	0.48	-0.1
2,513,783	+		PP_2207	0.48	+0.8
2,513,784	-		PP_2207	0.48	+0.3