Strain Fitness in Pseudomonas putida KT2440 around PP_2197

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
2,502,965	-		PP_2196	0.28	-0.5
2,503,421	-		PP_2196	0.76	+0.1
2,503,606	+				+0.7
2,503,826	-				-0.1
2,503,830	+				+0.2
2,503,860	-				+0.7
2,503,979	+		PP_2197	0.33	-1.2
2,503,979	+		PP_2197	0.33	-1.4
2,503,980	-		PP_2197	0.33	-0.8
2,503,980	-		PP_2197	0.33	-0.3
2,503,980	-		PP_2197	0.33	-0.6
2,504,190	-				+1.6
2,504,190	-				+1.1
2,504,465	-		PP_2198	0.22	-1.2
2,504,544	+		PP_2198	0.29	-1.2
2,504,545	-		PP_2198	0.29	+0.1
2,504,553	+		PP_2198	0.30	-0.4
2,504,554	-		PP_2198	0.30	+0.6
2,504,554	-		PP_2198	0.30	-0.6
2,504,554	-		PP_2198	0.30	-0.1
2,504,719	-		PP_2198	0.44	+0.3
2,504,798	+		PP_2198	0.51	+0.7
2,504,885	+		PP_2198	0.59	-2.5
2,504,886	-		PP_2198	0.59	+0.3
2,504,886	-		PP_2198	0.59	+0.3
2,504,926	+		PP_2198	0.62	-0.9
2,504,926	+		PP_2198	0.62	-2.2
2,504,927	-		PP_2198	0.62	-1.0
2,504,927	-		PP_2198	0.62	+0.6
2,504,927	-		PP_2198	0.62	+0.1
2,504,927	-		PP_2198	0.62	-0.7
2,504,927	-		PP_2198	0.62	-0.0
2,504,927	-		PP_2198	0.62	-0.1
2,504,927	-		PP_2198	0.62	+1.0
2,504,927	-		PP_2198	0.62	+0.1
2,504,927	-		PP_2198	0.62	+0.2
2,504,991	+		PP_2198	0.68	-0.2
2,504,991	+		PP_2198	0.68	+0.7
2,504,991	+		PP_2198	0.68	+0.7
2,504,991	+		PP_2198	0.68	-2.4
2,504,992	-		PP_2198	0.68	-0.1
2,505,024	+		PP_2198	0.71	+0.3
2,505,025	-		PP_2198	0.71	+0.2
2,505,025	-		PP_2198	0.71	+0.1
2,505,091	+		PP_2198	0.77	-0.0
2,505,091	+		PP_2198	0.77	+2.2
2,505,092	-		PP_2198	0.77	-0.2
2,505,119	+		PP_2198	0.79	+0.1
2,505,130	-		PP_2198	0.80	+0.3
2,505,172	+		PP_2198	0.84	+0.1