Strain Fitness in Pseudomonas putida KT2440 around PP_2167

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
2,472,099	+				-0.6
2,472,099	+				-2.4
2,472,100	-				+1.8
2,472,100	-				+1.3
2,472,100	-				-2.1
2,472,101	+				+0.4
2,472,102	-				+0.1
2,472,188	+				+0.9
2,472,188	+				-0.3
2,472,189	-				+0.4
2,472,201	-				+1.0
2,472,228	-				-0.7
2,472,246	+				-0.4
2,472,268	+				-0.8
2,472,297	+				-0.6
2,472,297	+				+0.8
2,472,453	+		PP_2167	0.11	-1.3
2,472,453	+		PP_2167	0.11	+0.3
2,472,453	+		PP_2167	0.11	+1.2
2,472,453	+		PP_2167	0.11	-1.8
2,472,453	+		PP_2167	0.11	-2.8
2,472,453	+		PP_2167	0.11	-0.6
2,472,453	+		PP_2167	0.11	+0.8
2,472,454	-		PP_2167	0.11	+2.3
2,472,454	-		PP_2167	0.11	+1.8
2,472,576	+		PP_2167	0.18	+0.6
2,472,576	+		PP_2167	0.18	+0.4
2,472,576	+		PP_2167	0.18	-0.8
2,472,577	-		PP_2167	0.18	+1.5
2,472,589	-		PP_2167	0.19	+0.8
2,472,589	-		PP_2167	0.19	-0.8
2,472,615	+		PP_2167	0.20	+0.7
2,472,616	-		PP_2167	0.20	+0.9
2,472,646	+		PP_2167	0.22	+0.7
2,472,646	+		PP_2167	0.22	-0.1
2,472,647	-		PP_2167	0.22	+1.1
2,472,647	-		PP_2167	0.22	+0.6
2,472,750	-		PP_2167	0.27	+0.8
2,472,926	-		PP_2167	0.37	+0.3
2,473,114	-		PP_2167	0.47	+0.1
2,473,347	+		PP_2167	0.60	+0.2
2,473,488	+		PP_2167	0.67	-0.2
2,473,488	+		PP_2167	0.67	-0.1
2,473,489	-		PP_2167	0.67	+0.4
2,473,491	+		PP_2167	0.67	+0.0
2,473,491	+		PP_2167	0.67	-0.5
2,473,491	+		PP_2167	0.67	-0.3
2,473,492	-		PP_2167	0.67	+0.2
2,473,509	+		PP_2167	0.68	+0.6
2,473,583	-		PP_2167	0.72	-0.1
2,473,623	+		PP_2167	0.74	-0.1
2,473,646	+		PP_2167	0.76	+0.9
2,473,854	-		PP_2167	0.87	+1.8
2,473,854	-		PP_2167	0.87	+0.6
2,473,861	-		PP_2167	0.87	+0.1
2,473,920	+				-1.1
2,473,920	+				+0.6
2,473,921	-				+0.1
2,473,921	-				-0.5
2,473,921	-				-0.5
2,474,005	+				+0.1
2,474,144	+				-0.5
2,474,158	+				+0.8
2,474,159	-				+0.2
2,474,159	-				-0.0
2,474,159	-				+0.3
2,474,205	+				+0.7
2,474,205	+				+0.0
2,474,205	+				+0.3
2,474,273	+				+1.1
2,474,274	-				+0.8
2,474,290	+				-0.1
2,474,335	-				-0.5
2,474,573	+		PP_2168	0.32	+0.1
2,474,573	+		PP_2168	0.32	+0.1
2,474,573	+		PP_2168	0.32	+0.8
2,474,573	+		PP_2168	0.32	-0.2
2,474,574	-		PP_2168	0.32	+0.2
2,474,574	-		PP_2168	0.32	+0.8
2,474,588	+		PP_2168	0.34	-0.1
2,474,588	+		PP_2168	0.34	+0.4
2,474,588	+		PP_2168	0.34	-0.5
2,474,589	-		PP_2168	0.34	-0.1
2,474,589	-		PP_2168	0.34	-0.2
2,474,589	-		PP_2168	0.34	+0.5
2,474,591	+				-0.4
2,474,591	+		PP_2168	0.34	-0.2
2,474,591	+		PP_2168	0.34	-0.8
2,474,597	+		PP_2168	0.35	-0.1
2,474,597	+		PP_2168	0.35	+0.4
2,474,597	+				+2.2
2,474,642	+		PP_2168	0.40	-0.4
2,474,666	+		PP_2168	0.42	-1.7
2,474,675	+		PP_2168	0.43	+0.2
2,474,676	-		PP_2168	0.43	+0.8
2,474,679	+		PP_2168	0.44	-1.2
2,474,679	+		PP_2168	0.44	-0.1
2,474,680	-		PP_2168	0.44	+0.0
2,474,836	+		PP_2168	0.61	+0.7
2,474,836	+		PP_2168	0.61	+0.3
2,474,867	+		PP_2168	0.64	-0.8
2,474,868	-		PP_2168	0.64	-1.4
2,474,946	+		PP_2168	0.72	-1.0
2,474,946	+		PP_2168	0.72	-0.9
2,475,018	+		PP_2168	0.80	+0.7
2,475,045	+		PP_2168	0.83	+0.1
2,475,045	+		PP_2168	0.83	+0.4
2,475,045	+		PP_2168	0.83	+0.1
2,475,046	-		PP_2168	0.83	+1.2
2,475,046	-		PP_2168	0.83	+0.3