Strain Fitness in Pseudomonas putida KT2440 around PP_2090

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
2,380,514	+		PP_2089	0.17	+0.5
2,380,985	-		PP_2089	0.63	+0.7
2,381,123	+		PP_2089	0.76	+1.7
2,381,240	+		PP_2089	0.87	+1.7
2,381,247	+				+1.7
2,381,248	-		PP_2089	0.88	+0.7
2,381,353	-				-1.8
2,381,353	-				+1.7
2,381,369	+				+1.7
2,381,369	+				+0.1
2,381,369	+				+1.7
2,381,370	-				-0.9
2,381,370	-				+0.7
2,381,370	-				+1.7
2,381,430	+				-1.2
2,381,484	+				+0.1
2,381,699	+		PP_2090	0.33	-1.3
2,381,699	+		PP_2090	0.33	+2.2
2,381,700	-		PP_2090	0.33	+0.4
2,381,751	+		PP_2090	0.40	-0.4
2,382,097	+		PP_2090	0.86	+0.4
2,382,184	+				+0.3
2,382,185	-				+0.3
2,382,185	-				-0.2
2,382,185	-				+0.5
2,382,253	+				-0.9
2,382,254	-				-0.9
2,382,254	-				+1.2
2,382,296	-				-0.9
2,382,517	+		PP_2091	0.17	+1.0
2,382,575	+		PP_2091	0.21	-0.0
2,382,575	+		PP_2091	0.21	-0.6
2,382,575	+		PP_2091	0.21	-0.6
2,382,575	+		PP_2091	0.21	-0.8
2,382,576	-		PP_2091	0.21	-1.0
2,382,576	-		PP_2091	0.21	-0.4
2,382,576	-		PP_2091	0.21	-0.1
2,382,629	+		PP_2091	0.24	-0.9
2,382,629	+		PP_2091	0.24	+0.2
2,382,629	+		PP_2091	0.24	-0.8
2,382,629	+		PP_2091	0.24	-0.6
2,382,629	+		PP_2091	0.24	-0.3
2,382,629	+		PP_2091	0.24	+0.8
2,382,629	+		PP_2091	0.24	-1.7
2,382,629	+		PP_2091	0.24	+0.2
2,382,630	-		PP_2091	0.24	+1.0
2,382,630	-		PP_2091	0.24	-0.8
2,382,630	-		PP_2091	0.24	+0.0
2,382,897	-		PP_2091	0.40	-0.6
2,382,897	-		PP_2091	0.40	+0.5
2,382,899	+		PP_2091	0.40	+0.4
2,382,900	-		PP_2091	0.40	+0.8
2,382,900	-		PP_2091	0.40	-1.2
2,382,900	-		PP_2091	0.40	-0.9
2,382,900	-		PP_2091	0.40	-0.7
2,382,928	+		PP_2091	0.42	+0.3
2,382,929	-				+1.7
2,383,071	-		PP_2091	0.51	+0.5