Strain Fitness in Pseudomonas putida KT2440 around PP_1806

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
2,029,445	+		PP_1805	0.57	-3.2
2,029,445	+		PP_1805	0.57	-3.8
2,029,445	+		PP_1805	0.57	-1.6
2,029,445	+		PP_1805	0.57	-2.3
2,029,445	+		PP_1805	0.57	-1.1
2,029,446	-		PP_1805	0.57	-2.6
2,029,474	-		PP_1805	0.59	-2.0
2,029,474	-		PP_1805	0.59	-4.0
2,029,474	-		PP_1805	0.59	-1.6
2,029,529	+		PP_1805	0.61	-3.1
2,029,529	+		PP_1805	0.61	-3.2
2,029,530	-		PP_1805	0.61	-3.4
2,029,530	-		PP_1805	0.61	-2.9
2,029,532	-		PP_1805	0.61	-2.7
2,029,532	-		PP_1805	0.61	-2.8
2,029,532	-		PP_1805	0.61	-3.4
2,029,532	-		PP_1805	0.61	-3.8
2,029,532	-		PP_1805	0.61	-1.8
2,029,532	-		PP_1805	0.61	-1.7
2,029,532	-		PP_1805	0.61	-3.5
2,029,604	+		PP_1805	0.65	-0.3
2,029,604	+		PP_1805	0.65	-2.7
2,029,605	-		PP_1805	0.65	-3.0
2,029,684	+		PP_1805	0.69	-2.8
2,029,684	+				+0.2
2,029,710	+		PP_1805	0.70	-2.7
2,029,710	+		PP_1805	0.70	-2.7
2,029,710	+		PP_1805	0.70	-3.5
2,029,710	+		PP_1805	0.70	-2.8
2,029,710	+		PP_1805	0.70	-2.6
2,029,711	-		PP_1805	0.70	-2.8
2,029,711	-		PP_1805	0.70	-3.0
2,029,711	-		PP_1805	0.70	-4.3
2,029,841	+		PP_1805	0.76	-1.8
2,029,842	-		PP_1805	0.76	-2.3
2,029,842	-		PP_1805	0.76	-3.0
2,029,842	-		PP_1805	0.76	-2.3
2,029,842	-		PP_1805	0.76	-2.7
2,029,842	-		PP_1805	0.76	-3.0
2,029,862	+		PP_1805	0.77	-2.7
2,029,881	-		PP_1805	0.78	-3.3
2,029,881	-		PP_1805	0.78	-2.5
2,029,939	+		PP_1805	0.81	-2.7
2,029,939	+		PP_1805	0.81	-1.8
2,029,939	+		PP_1805	0.81	-1.1
2,029,940	-		PP_1805	0.81	-4.0
2,029,940	-		PP_1805	0.81	-1.1
2,029,940	-		PP_1805	0.81	-2.3
2,029,940	-		PP_1805	0.81	-2.8
2,030,013	-		PP_1805	0.85	-3.9
2,030,017	+		PP_1805	0.85	-2.8
2,030,017	+		PP_1805	0.85	-4.1
2,030,017	+		PP_1805	0.85	-2.3
2,030,017	+		PP_1805	0.85	-3.2
2,030,018	-		PP_1805	0.85	-2.3
2,030,018	-		PP_1805	0.85	-0.6
2,030,021	+		PP_1805	0.85	-2.3
2,030,022	-				+1.7
2,030,160	+				-4.2
2,030,161	-				-1.2
2,030,161	-				-1.1
2,030,161	-				-2.8
2,030,161	-				-3.0
2,030,189	+				+0.5
2,030,189	+				-3.0
2,030,190	-				-4.2
2,030,190	-				-2.5
2,030,190	-				-1.6
2,030,200	+				-2.3
2,030,201	-				-3.0
2,030,257	+				-2.3
2,030,257	+				-2.5
2,030,258	-				-3.3
2,030,268	+				-2.1
2,030,269	-				-3.7
2,030,521	-		PP_1806	0.15	-2.1
2,030,571	+		PP_1806	0.21	-1.6
2,030,572	-		PP_1806	0.21	+0.3
2,030,665	+		PP_1806	0.31	-0.3
2,030,666	-		PP_1806	0.31	-1.6
2,030,790	+		PP_1806	0.44	-0.9
2,030,791	-		PP_1806	0.44	-0.7
2,030,821	-		PP_1806	0.47	-0.6
2,030,969	+		PP_1806	0.62	-2.1
2,031,081	+		PP_1806	0.74	+0.2
2,031,096	+		PP_1806	0.76	-0.6
2,031,161	+		PP_1806	0.82	-0.4
2,031,229	+		PP_1806	0.90	-0.3
2,031,229	+		PP_1806	0.90	-0.8
2,031,229	+		PP_1806	0.90	+0.6
2,031,229	+		PP_1806	0.90	+0.0
2,031,229	+		PP_1806	0.90	-1.1
2,031,230	-		PP_1806	0.90	-0.5
2,031,230	-		PP_1806	0.90	-0.8
2,031,337	+				+0.4
2,031,341	+				+0.4
2,031,342	-				+0.6
2,031,398	+				-0.0
2,031,399	-				+0.0
2,031,404	-				+0.1
2,031,410	+				-0.3
2,031,588	+		PP_1807	0.22	-1.7
2,031,588	+		PP_1807	0.22	-1.1
2,031,589	-		PP_1807	0.22	-0.6
2,031,686	+		PP_1807	0.34	-2.3
2,031,686	+		PP_1807	0.34	-0.7
2,031,686	+		PP_1807	0.34	-1.0
2,031,687	-		PP_1807	0.34	-1.0
2,031,687	-		PP_1807	0.34	-0.7
2,031,687	-		PP_1807	0.34	-0.6
2,031,687	-		PP_1807	0.34	-1.8
2,031,795	-		PP_1807	0.47	+0.3
2,031,795	-		PP_1807	0.47	+0.0
2,031,795	-		PP_1807	0.47	+0.3
2,031,882	+		PP_1807	0.57	-2.8
2,031,882	+		PP_1807	0.57	-2.5
2,031,882	+		PP_1807	0.57	-3.7
2,031,882	+		PP_1807	0.57	-1.9
2,031,882	+		PP_1807	0.57	-3.0
2,031,882	+		PP_1807	0.57	-1.1
2,031,883	-		PP_1807	0.57	-1.3
2,031,883	-		PP_1807	0.57	-0.3
2,031,883	-		PP_1807	0.57	-1.5
2,031,883	-		PP_1807	0.57	-0.9
2,032,049	-		PP_1807	0.77	-1.3
2,032,049	-		PP_1807	0.77	-0.6
2,032,099	+		PP_1807	0.83	-2.0
2,032,099	+		PP_1807	0.83	-2.7
2,032,099	+		PP_1807	0.83	-1.8
2,032,099	+		PP_1807	0.83	-1.9
2,032,099	+		PP_1807	0.83	-2.8
2,032,100	-		PP_1807	0.83	-0.7
2,032,132	+		PP_1807	0.87	-0.8
2,032,132	+				+0.2
2,032,133	-		PP_1807	0.87	-1.2
2,032,133	-		PP_1807	0.87	+0.8
2,032,133	-		PP_1807	0.87	-2.3
2,032,133	-		PP_1807	0.87	+0.1
2,032,148	+		PP_1807	0.88	-2.3
2,032,149	-		PP_1807	0.89	-0.6
2,032,256	+				-1.8
2,032,264	+				-2.9
2,032,296	+				-3.0
2,032,299	+				-4.1
2,032,299	+				-3.8
2,032,299	+				-2.0
2,032,299	+				-4.0
2,032,299	+				-2.4
2,032,300	-				+0.2
2,032,300	-				-0.2