Strain Fitness in Pseudomonas putida KT2440 around PP_1786

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
1,999,472	-				+0.8
1,999,491	-				+0.3
1,999,578	+				+0.8
1,999,579	-				+0.3
1,999,579	-				+2.0
1,999,602	-				+1.1
1,999,694	+				-0.2
1,999,694	+				+0.1
1,999,785	+				+0.6
1,999,785	+				+1.6
1,999,795	+				-0.5
1,999,795	+				-0.2
1,999,796	-				+0.3
1,999,796	-				+1.3
1,999,800	+				+1.3
1,999,800	+				-0.9
1,999,819	+				-1.0
1,999,907	-				+1.8
1,999,977	+				+0.3
1,999,998	+				-0.6
2,000,047	-				+1.4
2,000,068	+				+0.3
2,000,068	+				+2.1
2,000,088	+				+0.6
2,000,088	+				+2.3
2,000,088	+				+0.7
2,000,113	+				+1.0
2,000,205	+				+1.7
2,000,205	+				+0.6
2,000,205	+				+1.8
2,000,206	-				+1.6
2,000,438	-		PP_1786	0.11	+1.7
2,000,488	+		PP_1786	0.12	+1.8
2,000,489	-		PP_1786	0.12	+1.4
2,000,526	+		PP_1786	0.14	+1.4
2,000,526	+		PP_1786	0.14	+1.9
2,000,617	+		PP_1786	0.16	+1.6
2,000,617	+		PP_1786	0.16	+2.1
2,000,619	+		PP_1786	0.16	+1.2
2,000,619	+		PP_1786	0.16	+1.4
2,000,638	+		PP_1786	0.17	+0.8
2,000,644	+		PP_1786	0.17	+1.4
2,000,680	-				+3.8
2,000,705	+		PP_1786	0.19	+1.7
2,000,705	+		PP_1786	0.19	+1.7
2,000,705	+		PP_1786	0.19	+1.3
2,000,706	-		PP_1786	0.19	+0.8
2,000,804	+		PP_1786	0.22	+1.8
2,000,804	+		PP_1786	0.22	+1.9
2,000,804	+		PP_1786	0.22	+1.5
2,000,804	+		PP_1786	0.22	+1.8
2,000,804	+		PP_1786	0.22	+2.1
2,000,804	+		PP_1786	0.22	+1.9
2,000,804	+		PP_1786	0.22	+1.8
2,000,805	-		PP_1786	0.22	+1.8
2,000,827	+		PP_1786	0.22	+0.7
2,000,841	-		PP_1786	0.23	+1.9
2,000,956	+		PP_1786	0.26	+2.4
2,000,956	+		PP_1786	0.26	+1.6
2,001,093	-		PP_1786	0.30	+1.6
2,001,093	-		PP_1786	0.30	+0.4
2,001,093	-		PP_1786	0.30	+1.8
2,001,114	-		PP_1786	0.31	+1.0
2,001,114	-		PP_1786	0.31	+1.5
2,001,134	+		PP_1786	0.31	+1.0
2,001,134	+				+2.3
2,001,135	-		PP_1786	0.31	+1.3
2,001,135	-				+2.8
2,001,214	-		PP_1786	0.34	+2.2
2,001,233	-		PP_1786	0.34	+1.0
2,001,234	+		PP_1786	0.34	+3.0
2,001,396	+		PP_1786	0.39	+2.3
2,001,397	-		PP_1786	0.39	+1.2
2,001,397	-		PP_1786	0.39	+1.6
2,001,493	+		PP_1786	0.42	+1.4
2,001,494	-		PP_1786	0.42	+1.9
2,001,497	+		PP_1786	0.42	+1.7
2,001,498	-		PP_1786	0.42	+2.6
2,001,498	-		PP_1786	0.42	+1.1
2,001,498	-		PP_1786	0.42	+2.2
2,001,595	+				+2.6
2,001,721	+		PP_1786	0.48	+1.2
2,001,728	+		PP_1786	0.48	+1.6
2,001,950	-		PP_1786	0.55	+2.2
2,002,200	-		PP_1786	0.62	+1.7
2,002,222	+		PP_1786	0.63	+1.5
2,002,377	-		PP_1786	0.67	+1.5
2,002,448	+		PP_1786	0.69	+1.3
2,002,448	+		PP_1786	0.69	+0.7
2,002,448	+		PP_1786	0.69	+2.1
2,002,455	-		PP_1786	0.70	+0.7
2,002,473	-		PP_1786	0.70	+1.4
2,002,516	+		PP_1786	0.71	+0.8
2,002,517	-		PP_1786	0.71	-1.3
2,002,533	-		PP_1786	0.72	+1.8
2,002,657	+		PP_1786	0.75	+0.6
2,002,705	+		PP_1786	0.77	+2.4
2,002,743	-		PP_1786	0.78	+2.4
2,002,753	-		PP_1786	0.78	+2.5
2,002,769	-		PP_1786	0.79	+1.6
2,002,946	-		PP_1786	0.84	+1.9
2,002,952	+		PP_1786	0.84	+2.0
2,002,968	+		PP_1786	0.84	+1.8
2,003,006	+		PP_1786	0.86	+1.7
2,003,010	-		PP_1786	0.86	+1.8
2,003,091	-		PP_1786	0.88	+0.9
2,003,169	-				+1.7
2,003,269	+				+1.4
2,003,305	+				+2.0
2,003,316	-				+1.8
2,003,343	+				+1.5
2,003,347	-				+1.6
2,003,356	-				+2.5
2,003,363	-				+1.8
2,003,453	+				+1.3
2,003,453	+				+2.2
2,003,672	-		PP_1787	0.17	+1.7
2,003,770	+		PP_1787	0.27	+0.4
2,003,892	+		PP_1787	0.39	+1.4
2,004,070	-		PP_1787	0.56	+0.8
2,004,113	-		PP_1787	0.61	+1.0
2,004,139	+		PP_1787	0.63	+1.2
2,004,255	-		PP_1787	0.75	+1.2
2,004,335	+		PP_1787	0.83	+1.2