Experiment: P. putida PUT10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1700 and PP_1701 are separated by 3 nucleotides PP_1701 and PP_1702 are separated by 217 nucleotides PP_1702 and PP_t15 are separated by 217 nucleotides PP_t15 and PP_t16 are separated by 13 nucleotides PP_t16 and PP_t17 are separated by 170 nucleotides PP_t17 and PP_t18 are separated by 13 nucleotides
PP_1700: PP_1700 - Acyltransferase, at 1,894,767 to 1,896,752
_1700
PP_1701: PP_1701 - transporter, at 1,896,756 to 1,897,073
_1701
PP_1702: PP_1702 - Recombination-associated protein RdgC, at 1,897,291 to 1,898,211
_1702
PP_t15: PP_t15 - tRNA-Val, at 1,898,429 to 1,898,504
_t15
PP_t16: PP_t16 - tRNA-Asp, at 1,898,518 to 1,898,594
_t16
PP_t17: PP_t17 - tRNA-Val, at 1,898,765 to 1,898,840
_t17
PP_t18: PP_t18 - tRNA-Asp, at 1,898,854 to 1,898,930
_t18
Position (kb)
1897
1898
1899 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1896.303 kb on - strand, within PP_1700 at 1896.330 kb on + strand, within PP_1700 at 1896.333 kb on + strand, within PP_1700 at 1896.334 kb on - strand, within PP_1700 at 1896.334 kb on - strand, within PP_1700 at 1896.334 kb on - strand, within PP_1700 at 1896.334 kb on - strand, within PP_1700 at 1896.334 kb on - strand, within PP_1700 at 1896.342 kb on + strand, within PP_1700 at 1896.342 kb on + strand, within PP_1700 at 1896.342 kb on + strand, within PP_1700 at 1896.342 kb on + strand, within PP_1700 at 1896.342 kb on + strand, within PP_1700 at 1896.342 kb on + strand, within PP_1700 at 1896.343 kb on - strand, within PP_1700 at 1896.424 kb on - strand, within PP_1700 at 1896.424 kb on - strand at 1896.424 kb on - strand, within PP_1700 at 1896.424 kb on - strand, within PP_1700 at 1896.453 kb on + strand, within PP_1700 at 1896.518 kb on - strand, within PP_1700 at 1896.602 kb on + strand at 1896.603 kb on - strand at 1896.971 kb on + strand, within PP_1701 at 1897.286 kb on - strand at 1897.643 kb on + strand at 1897.643 kb on + strand, within PP_1702 at 1897.643 kb on + strand, within PP_1702 at 1897.643 kb on + strand, within PP_1702 at 1897.644 kb on - strand at 1897.644 kb on - strand, within PP_1702 at 1897.644 kb on - strand, within PP_1702 at 1897.911 kb on + strand, within PP_1702 at 1897.912 kb on - strand, within PP_1702 at 1898.024 kb on + strand, within PP_1702 at 1898.024 kb on + strand, within PP_1702 at 1898.024 kb on + strand, within PP_1702 at 1898.025 kb on - strand, within PP_1702 at 1898.087 kb on + strand, within PP_1702 at 1898.087 kb on + strand, within PP_1702 at 1898.087 kb on + strand, within PP_1702 at 1898.186 kb on + strand at 1898.229 kb on + strand at 1898.230 kb on - strand at 1898.230 kb on - strand at 1898.236 kb on + strand at 1898.236 kb on + strand at 1898.248 kb on + strand at 1898.248 kb on + strand at 1898.301 kb on + strand at 1898.301 kb on + strand at 1898.301 kb on + strand at 1898.301 kb on + strand at 1898.301 kb on + strand at 1898.437 kb on - strand at 1898.630 kb on + strand at 1898.709 kb on - strand at 1898.739 kb on - strand at 1898.984 kb on + strand at 1899.043 kb on - strand at 1899.043 kb on - strand at 1899.191 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1 remove 1,896,303 - PP_1700 0.77 -1.0 1,896,330 + PP_1700 0.79 -0.6 1,896,333 + PP_1700 0.79 +0.5 1,896,334 - PP_1700 0.79 +0.0 1,896,334 - PP_1700 0.79 +0.9 1,896,334 - PP_1700 0.79 +0.5 1,896,334 - PP_1700 0.79 +0.3 1,896,334 - PP_1700 0.79 +2.1 1,896,342 + PP_1700 0.79 -0.2 1,896,342 + PP_1700 0.79 -1.3 1,896,342 + PP_1700 0.79 -0.5 1,896,342 + PP_1700 0.79 +0.4 1,896,342 + PP_1700 0.79 +0.4 1,896,342 + PP_1700 0.79 -0.6 1,896,343 - PP_1700 0.79 -1.1 1,896,424 - PP_1700 0.83 +0.3 1,896,424 - +4.1 1,896,424 - PP_1700 0.83 +0.4 1,896,424 - PP_1700 0.83 -0.0 1,896,453 + PP_1700 0.85 +0.7 1,896,518 - PP_1700 0.88 -0.1 1,896,602 + +0.3 1,896,603 - +0.1 1,896,971 + PP_1701 0.68 -0.8 1,897,286 - +0.7 1,897,643 + -1.2 1,897,643 + PP_1702 0.38 -2.7 1,897,643 + PP_1702 0.38 -2.5 1,897,643 + PP_1702 0.38 -1.0 1,897,644 - -1.2 1,897,644 - PP_1702 0.38 -1.0 1,897,644 - PP_1702 0.38 -1.9 1,897,911 + PP_1702 0.67 +0.2 1,897,912 - PP_1702 0.67 -1.2 1,898,024 + PP_1702 0.80 -1.0 1,898,024 + PP_1702 0.80 -0.6 1,898,024 + PP_1702 0.80 -0.8 1,898,025 - PP_1702 0.80 -2.5 1,898,087 + PP_1702 0.86 -2.8 1,898,087 + PP_1702 0.86 -2.1 1,898,087 + PP_1702 0.86 -0.2 1,898,186 + -1.4 1,898,229 + -0.4 1,898,230 - +0.6 1,898,230 - +0.1 1,898,236 + -2.9 1,898,236 + -2.5 1,898,248 + -2.9 1,898,248 + -1.1 1,898,301 + +1.3 1,898,301 + +1.4 1,898,301 + +0.2 1,898,301 + -0.5 1,898,301 + +0.1 1,898,437 - -1.2 1,898,630 + -0.1 1,898,709 - -0.3 1,898,739 - -1.8 1,898,984 + -1.4 1,899,043 - +0.4 1,899,043 - +0.1 1,899,191 - +0.2
Or see this region's nucleotide sequence