Strain Fitness in Pseudomonas putida KT2440 around PP_1702

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
1,896,303	-		PP_1700	0.77	-1.0
1,896,330	+		PP_1700	0.79	-0.6
1,896,333	+		PP_1700	0.79	+0.5
1,896,334	-		PP_1700	0.79	+0.0
1,896,334	-		PP_1700	0.79	+0.9
1,896,334	-		PP_1700	0.79	+0.5
1,896,334	-		PP_1700	0.79	+0.3
1,896,334	-		PP_1700	0.79	+2.1
1,896,342	+		PP_1700	0.79	-0.2
1,896,342	+		PP_1700	0.79	-1.3
1,896,342	+		PP_1700	0.79	-0.5
1,896,342	+		PP_1700	0.79	+0.4
1,896,342	+		PP_1700	0.79	+0.4
1,896,342	+		PP_1700	0.79	-0.6
1,896,343	-		PP_1700	0.79	-1.1
1,896,424	-		PP_1700	0.83	+0.3
1,896,424	-				+4.1
1,896,424	-		PP_1700	0.83	+0.4
1,896,424	-		PP_1700	0.83	-0.0
1,896,453	+		PP_1700	0.85	+0.7
1,896,518	-		PP_1700	0.88	-0.1
1,896,602	+				+0.3
1,896,603	-				+0.1
1,896,971	+		PP_1701	0.68	-0.8
1,897,286	-				+0.7
1,897,643	+				-1.2
1,897,643	+		PP_1702	0.38	-2.7
1,897,643	+		PP_1702	0.38	-2.5
1,897,643	+		PP_1702	0.38	-1.0
1,897,644	-				-1.2
1,897,644	-		PP_1702	0.38	-1.0
1,897,644	-		PP_1702	0.38	-1.9
1,897,911	+		PP_1702	0.67	+0.2
1,897,912	-		PP_1702	0.67	-1.2
1,898,024	+		PP_1702	0.80	-1.0
1,898,024	+		PP_1702	0.80	-0.6
1,898,024	+		PP_1702	0.80	-0.8
1,898,025	-		PP_1702	0.80	-2.5
1,898,087	+		PP_1702	0.86	-2.8
1,898,087	+		PP_1702	0.86	-2.1
1,898,087	+		PP_1702	0.86	-0.2
1,898,186	+				-1.4
1,898,229	+				-0.4
1,898,230	-				+0.6
1,898,230	-				+0.1
1,898,236	+				-2.9
1,898,236	+				-2.5
1,898,248	+				-2.9
1,898,248	+				-1.1
1,898,301	+				+1.3
1,898,301	+				+1.4
1,898,301	+				+0.2
1,898,301	+				-0.5
1,898,301	+				+0.1
1,898,437	-				-1.2
1,898,630	+				-0.1
1,898,709	-				-0.3
1,898,739	-				-1.8
1,898,984	+				-1.4
1,899,043	-				+0.4
1,899,043	-				+0.1
1,899,191	-				+0.2