Strain Fitness in Pseudomonas putida KT2440 around PP_1441

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
1,639,966	+				+0.5
1,639,967	-				-0.5
1,639,967	-				-0.7
1,639,967	-				+0.2
1,639,967	-				+0.1
1,639,967	-				-1.1
1,640,211	+		PP_1440	0.23	-1.3
1,640,212	-		PP_1440	0.23	-0.6
1,640,365	-		PP_1440	0.39	-0.4
1,640,365	-		PP_1440	0.39	-0.5
1,640,365	-		PP_1440	0.39	+0.8
1,640,365	-		PP_1440	0.39	-0.7
1,640,365	-		PP_1440	0.39	-0.6
1,640,463	+		PP_1440	0.49	-0.9
1,640,464	-		PP_1440	0.49	-0.5
1,640,464	-		PP_1440	0.49	-0.1
1,640,557	-		PP_1440	0.59	-0.8
1,640,557	-		PP_1440	0.59	-1.0
1,640,557	-		PP_1440	0.59	-2.6
1,640,560	-		PP_1440	0.59	-0.7
1,640,960	-				-0.4
1,641,048	+		PP_1441	0.14	-1.7
1,641,049	-		PP_1441	0.14	-1.5
1,641,049	-		PP_1441	0.14	-1.0
1,641,108	-		PP_1441	0.22	-1.8
1,641,337	+		PP_1441	0.52	-0.6
1,641,338	-		PP_1441	0.53	-0.7
1,641,386	+		PP_1441	0.59	-0.4
1,641,420	+		PP_1441	0.64	-0.9
1,641,420	+		PP_1441	0.64	+0.3
1,641,506	+				-0.3
1,641,506	+		PP_1441	0.75	-1.1
1,641,732	-				-0.2
1,641,732	-				-1.4
1,641,732	-				-2.1
1,641,848	-		PP_1442	0.17	-0.7
1,641,848	-		PP_1442	0.17	+0.4
1,641,947	-		PP_1442	0.42	-0.1
1,641,973	-		PP_1442	0.49	-0.3
1,641,973	-		PP_1442	0.49	-0.5
1,642,034	+		PP_1442	0.65	+2.5
1,642,502	-				+0.7
1,642,637	-		PP_1443	0.13	+0.2