Strain Fitness in Pseudomonas putida KT2440 around PP_1387

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
1,581,968	+		PP_1386	0.49	+0.3
1,581,968	+		PP_1386	0.49	-0.4
1,581,973	-		PP_1386	0.50	+0.4
1,581,973	-		PP_1386	0.50	+0.5
1,582,088	+		PP_1386	0.60	+1.1
1,582,089	-		PP_1386	0.60	-1.0
1,582,157	+		PP_1386	0.66	-0.9
1,582,158	-		PP_1386	0.66	-0.4
1,582,158	-		PP_1386	0.66	-0.0
1,582,199	+				-0.3
1,582,199	+		PP_1386	0.69	+0.3
1,582,199	+		PP_1386	0.69	-0.3
1,582,200	-		PP_1386	0.69	-1.1
1,582,200	-		PP_1386	0.69	-0.5
1,582,222	-		PP_1386	0.71	+0.1
1,582,222	-		PP_1386	0.71	-0.1
1,582,222	-		PP_1386	0.71	-0.4
1,582,263	-		PP_1386	0.75	-1.4
1,582,263	-		PP_1386	0.75	+0.2
1,582,283	+		PP_1386	0.76	-0.7
1,582,283	+		PP_1386	0.76	-0.8
1,582,283	+		PP_1386	0.76	+0.4
1,582,284	-		PP_1386	0.77	-0.6
1,582,284	-		PP_1386	0.77	+0.7
1,582,376	+		PP_1386	0.85	-0.6
1,582,377	-		PP_1386	0.85	-0.6
1,582,595	+				+0.8
1,582,596	-				-1.0
1,582,628	-				-0.1
1,582,663	+				-1.0
1,582,707	-				-1.0
1,582,725	+				+0.9
1,582,725	+				-0.6
1,582,725	+				-0.3
1,582,726	-				+0.8
1,582,726	-				-0.6
1,582,726	-				-0.1
1,582,805	+				+0.8
1,582,805	+				+0.5
1,582,805	+				+0.1
1,582,806	-				+0.2
1,582,806	-				+0.6
1,582,884	+		PP_1387	0.11	-1.2
1,582,884	+		PP_1387	0.11	-0.8
1,582,885	-		PP_1387	0.12	-0.1
1,583,319	+		PP_1387	0.80	+0.0
1,583,319	+		PP_1387	0.80	+0.0
1,583,320	-		PP_1387	0.80	+0.0
1,583,348	-		PP_1387	0.85	+0.7
1,583,487	-				-0.0
1,583,487	-				-1.1
1,583,494	+				+0.9
1,583,495	-				+0.5
1,583,495	-				+0.7
1,583,495	-				-2.0
1,583,498	-				-0.7
1,583,498	-				+0.4
1,584,022	+		PP_1388	0.32	-1.4
1,584,023	-		PP_1388	0.32	-0.6
1,584,139	+		PP_1388	0.40	-0.1
1,584,415	+		PP_1388	0.59	+0.2
1,584,415	+		PP_1388	0.59	+0.6
1,584,415	+		PP_1388	0.59	-1.0
1,584,415	+		PP_1388	0.59	-0.1
1,584,416	-		PP_1388	0.59	-0.2
1,584,416	-		PP_1388	0.59	+1.1