Experiment: P. putida PUT10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1386 and PP_1387 are separated by 257 nucleotides PP_1387 and PP_1388 are separated by 117 nucleotides
PP_1386: PP_1386 - Probable efflux pump periplasmic linker TtgA, at 1,581,400 to 1,582,554
_1386
PP_1387: PP_1387 - Probable HTH-type transcriptional regulator TtgR, at 1,582,812 to 1,583,444
_1387
PP_1388: PP_1388 - Drug resistance transporter, EmrB/QacA family, at 1,583,562 to 1,585,013
_1388
Position (kb)
1582
1583
1584 Strain fitness (log2 ratio)
-2
-1
0
1 at 1581.968 kb on + strand, within PP_1386 at 1581.968 kb on + strand, within PP_1386 at 1581.973 kb on - strand, within PP_1386 at 1581.973 kb on - strand, within PP_1386 at 1582.088 kb on + strand, within PP_1386 at 1582.089 kb on - strand, within PP_1386 at 1582.157 kb on + strand, within PP_1386 at 1582.158 kb on - strand, within PP_1386 at 1582.158 kb on - strand, within PP_1386 at 1582.199 kb on + strand at 1582.199 kb on + strand, within PP_1386 at 1582.199 kb on + strand, within PP_1386 at 1582.200 kb on - strand, within PP_1386 at 1582.200 kb on - strand, within PP_1386 at 1582.222 kb on - strand, within PP_1386 at 1582.222 kb on - strand, within PP_1386 at 1582.222 kb on - strand, within PP_1386 at 1582.263 kb on - strand, within PP_1386 at 1582.263 kb on - strand, within PP_1386 at 1582.283 kb on + strand, within PP_1386 at 1582.283 kb on + strand, within PP_1386 at 1582.283 kb on + strand, within PP_1386 at 1582.284 kb on - strand, within PP_1386 at 1582.284 kb on - strand, within PP_1386 at 1582.376 kb on + strand, within PP_1386 at 1582.377 kb on - strand, within PP_1386 at 1582.595 kb on + strand at 1582.596 kb on - strand at 1582.628 kb on - strand at 1582.663 kb on + strand at 1582.707 kb on - strand at 1582.725 kb on + strand at 1582.725 kb on + strand at 1582.725 kb on + strand at 1582.726 kb on - strand at 1582.726 kb on - strand at 1582.726 kb on - strand at 1582.805 kb on + strand at 1582.805 kb on + strand at 1582.805 kb on + strand at 1582.806 kb on - strand at 1582.806 kb on - strand at 1582.884 kb on + strand, within PP_1387 at 1582.884 kb on + strand, within PP_1387 at 1582.885 kb on - strand, within PP_1387 at 1583.319 kb on + strand, within PP_1387 at 1583.319 kb on + strand, within PP_1387 at 1583.320 kb on - strand, within PP_1387 at 1583.348 kb on - strand, within PP_1387 at 1583.487 kb on - strand at 1583.487 kb on - strand at 1583.494 kb on + strand at 1583.495 kb on - strand at 1583.495 kb on - strand at 1583.495 kb on - strand at 1583.498 kb on - strand at 1583.498 kb on - strand at 1584.022 kb on + strand, within PP_1388 at 1584.023 kb on - strand, within PP_1388 at 1584.139 kb on + strand, within PP_1388 at 1584.415 kb on + strand, within PP_1388 at 1584.415 kb on + strand, within PP_1388 at 1584.415 kb on + strand, within PP_1388 at 1584.415 kb on + strand, within PP_1388 at 1584.416 kb on - strand, within PP_1388 at 1584.416 kb on - strand, within PP_1388
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1 remove 1,581,968 + PP_1386 0.49 +0.3 1,581,968 + PP_1386 0.49 -0.4 1,581,973 - PP_1386 0.50 +0.4 1,581,973 - PP_1386 0.50 +0.5 1,582,088 + PP_1386 0.60 +1.1 1,582,089 - PP_1386 0.60 -1.0 1,582,157 + PP_1386 0.66 -0.9 1,582,158 - PP_1386 0.66 -0.4 1,582,158 - PP_1386 0.66 -0.0 1,582,199 + -0.3 1,582,199 + PP_1386 0.69 +0.3 1,582,199 + PP_1386 0.69 -0.3 1,582,200 - PP_1386 0.69 -1.1 1,582,200 - PP_1386 0.69 -0.5 1,582,222 - PP_1386 0.71 +0.1 1,582,222 - PP_1386 0.71 -0.1 1,582,222 - PP_1386 0.71 -0.4 1,582,263 - PP_1386 0.75 -1.4 1,582,263 - PP_1386 0.75 +0.2 1,582,283 + PP_1386 0.76 -0.7 1,582,283 + PP_1386 0.76 -0.8 1,582,283 + PP_1386 0.76 +0.4 1,582,284 - PP_1386 0.77 -0.6 1,582,284 - PP_1386 0.77 +0.7 1,582,376 + PP_1386 0.85 -0.6 1,582,377 - PP_1386 0.85 -0.6 1,582,595 + +0.8 1,582,596 - -1.0 1,582,628 - -0.1 1,582,663 + -1.0 1,582,707 - -1.0 1,582,725 + +0.9 1,582,725 + -0.6 1,582,725 + -0.3 1,582,726 - +0.8 1,582,726 - -0.6 1,582,726 - -0.1 1,582,805 + +0.8 1,582,805 + +0.5 1,582,805 + +0.1 1,582,806 - +0.2 1,582,806 - +0.6 1,582,884 + PP_1387 0.11 -1.2 1,582,884 + PP_1387 0.11 -0.8 1,582,885 - PP_1387 0.12 -0.1 1,583,319 + PP_1387 0.80 +0.0 1,583,319 + PP_1387 0.80 +0.0 1,583,320 - PP_1387 0.80 +0.0 1,583,348 - PP_1387 0.85 +0.7 1,583,487 - -0.0 1,583,487 - -1.1 1,583,494 + +0.9 1,583,495 - +0.5 1,583,495 - +0.7 1,583,495 - -2.0 1,583,498 - -0.7 1,583,498 - +0.4 1,584,022 + PP_1388 0.32 -1.4 1,584,023 - PP_1388 0.32 -0.6 1,584,139 + PP_1388 0.40 -0.1 1,584,415 + PP_1388 0.59 +0.2 1,584,415 + PP_1388 0.59 +0.6 1,584,415 + PP_1388 0.59 -1.0 1,584,415 + PP_1388 0.59 -0.1 1,584,416 - PP_1388 0.59 -0.2 1,584,416 - PP_1388 0.59 +1.1
Or see this region's nucleotide sequence