Strain Fitness in Pseudomonas putida KT2440 around PP_1281

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
1,462,078	+		PP_1280	0.42	-0.5
1,462,079	-		PP_1280	0.42	-0.2
1,462,117	+		PP_1280	0.45	-0.3
1,462,117	+		PP_1280	0.45	+0.1
1,462,118	-		PP_1280	0.45	-0.5
1,462,119	+		PP_1280	0.45	+0.7
1,462,119	+		PP_1280	0.45	+0.4
1,462,120	-		PP_1280	0.45	-0.6
1,462,120	-		PP_1280	0.45	-0.2
1,462,120	-		PP_1280	0.45	+0.4
1,462,206	+		PP_1280	0.51	-0.9
1,462,206	+		PP_1280	0.51	+0.2
1,462,207	-		PP_1280	0.51	-0.6
1,462,221	+		PP_1280	0.52	-1.7
1,462,222	-		PP_1280	0.52	+0.8
1,462,505	+		PP_1280	0.71	-0.5
1,462,506	-		PP_1280	0.71	-0.7
1,462,506	-		PP_1280	0.71	+0.4
1,462,518	+		PP_1280	0.72	-1.1
1,462,518	+		PP_1280	0.72	+0.7
1,462,518	+		PP_1280	0.72	-0.7
1,462,519	-		PP_1280	0.72	-1.1
1,462,539	+		PP_1280	0.74	-3.6
1,462,540	-		PP_1280	0.74	-0.8
1,462,540	-		PP_1280	0.74	-2.0
1,462,540	-		PP_1280	0.74	+0.1
1,462,540	-		PP_1280	0.74	+0.2
1,462,651	-		PP_1280	0.81	-1.2
1,462,750	-		PP_1280	0.88	-0.2
1,462,807	-				-0.2
1,462,807	-				-0.5
1,462,807	-				-2.6
1,462,816	-				-1.1
1,462,816	-				-0.2
1,462,863	+				+0.1
1,462,864	-				+0.7
1,462,866	+				+0.8
1,462,866	+				-0.1
1,462,867	-				+0.6
1,462,867	-				+0.5
1,462,937	-				-3.5
1,463,003	+				+0.1
1,463,003	+				+0.5
1,463,003	+				-0.5
1,463,003	+				+0.0
1,463,003	+				+0.7
1,463,004	-				-3.6
1,463,004	-				-1.5
1,463,004	-				-3.8
1,463,004	-				-2.3
1,463,004	-				-3.4
1,463,094	+				+0.3
1,463,181	+		PP_1281	0.10	+0.5
1,463,401	-		PP_1281	0.30	-2.4
1,463,401	-		PP_1281	0.30	-3.9
1,463,487	+		PP_1281	0.38	-0.4
1,463,566	-		PP_1281	0.45	-1.1
1,463,566	-		PP_1281	0.45	-0.9
1,463,566	-		PP_1281	0.45	-1.5
1,463,579	+		PP_1281	0.46	+0.4
1,463,579	+		PP_1281	0.46	-2.4
1,463,579	+		PP_1281	0.46	+0.1
1,463,580	-		PP_1281	0.46	-0.3
1,463,580	-		PP_1281	0.46	-0.8
1,463,580	-		PP_1281	0.46	-2.5
1,463,770	-		PP_1281	0.63	-1.6
1,463,859	+		PP_1281	0.71	-1.4
1,463,859	+		PP_1281	0.71	-0.2
1,463,859	+		PP_1281	0.71	-0.9
1,463,860	-		PP_1281	0.71	-1.1
1,463,860	-		PP_1281	0.71	-0.1
1,463,860	-		PP_1281	0.71	-1.1
1,463,976	+		PP_1281	0.82	-0.2
1,463,977	-		PP_1281	0.82	-1.3
1,464,006	+		PP_1281	0.84	+0.4
1,464,006	+		PP_1281	0.84	+0.4
1,464,006	+		PP_1281	0.84	-1.1
1,464,006	+		PP_1281	0.84	-0.2
1,464,007	-		PP_1281	0.84	+0.7
1,464,007	-		PP_1281	0.84	-0.6
1,464,007	-		PP_1281	0.84	+0.0
1,464,007	-		PP_1281	0.84	-2.4
1,464,037	+		PP_1281	0.87	-0.5
1,464,072	+				+1.5
1,464,072	+				-0.1
1,464,073	-				-0.2
1,464,075	+				+0.0
1,464,076	-				+0.8
1,464,274	+				-2.1
1,464,401	+		PP_1282	0.15	-0.1
1,464,696	-		PP_1282	0.36	-0.1
1,464,761	+		PP_1282	0.40	+0.3
1,464,761	+		PP_1282	0.40	-0.4
1,464,761	+		PP_1282	0.40	-0.2
1,464,762	-		PP_1282	0.41	-0.0
1,464,762	-		PP_1282	0.41	-0.4
1,464,762	-		PP_1282	0.41	+0.6
1,464,762	-		PP_1282	0.41	-0.3
1,464,762	-		PP_1282	0.41	-4.1
1,464,789	-		PP_1282	0.42	-1.9
1,464,902	+		PP_1282	0.50	-0.2
1,464,902	+		PP_1282	0.50	+0.1
1,464,902	+		PP_1282	0.50	-0.9
1,464,903	-		PP_1282	0.50	+0.9
1,464,914	+		PP_1282	0.51	+0.1
1,465,103	+		PP_1282	0.64	-0.6
1,465,172	+		PP_1282	0.69	-0.1