Strain Fitness in Pseudomonas putida KT2440 around PP_1189

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
1,363,821	+		PP_1188	0.39	+0.6
1,363,821	+		PP_1188	0.39	+0.4
1,363,822	-		PP_1188	0.39	-0.6
1,363,944	+		PP_1188	0.48	-0.3
1,363,945	-		PP_1188	0.48	-1.1
1,363,945	-		PP_1188	0.48	+0.1
1,363,992	+		PP_1188	0.52	-0.5
1,363,992	+		PP_1188	0.52	-0.2
1,363,993	-		PP_1188	0.52	-2.4
1,364,076	+		PP_1188	0.58	-0.4
1,364,077	-		PP_1188	0.58	+1.2
1,364,179	+		PP_1188	0.66	-0.2
1,364,235	+		PP_1188	0.70	+0.4
1,364,236	-		PP_1188	0.70	-0.4
1,364,236	-		PP_1188	0.70	+0.4
1,364,678	+				+0.9
1,364,789	-				+0.2
1,364,836	+				+0.8
1,364,836	+				+2.0
1,364,836	+				+0.4
1,364,836	+				+0.4
1,364,836	+				+1.0
1,364,837	-				+0.9
1,364,837	-				+0.6
1,364,837	-				+0.9
1,364,864	+		PP_1189	0.12	+0.0
1,364,884	+		PP_1189	0.15	+1.3
1,364,885	-		PP_1189	0.15	+0.3
1,364,885	-		PP_1189	0.15	+1.3
1,365,065	+		PP_1189	0.41	+0.6
1,365,065	+		PP_1189	0.41	-0.0
1,365,074	+		PP_1189	0.42	+0.9
1,365,074	+		PP_1189	0.42	+0.9
1,365,074	+		PP_1189	0.42	+0.3
1,365,075	-		PP_1189	0.42	+0.8
1,365,075	-		PP_1189	0.42	-0.3
1,365,371	-		PP_1189	0.85	+1.4
1,365,371	-		PP_1189	0.85	+1.7
1,365,371	-		PP_1189	0.85	+0.8
1,365,462	+				+1.1
1,365,462	+				+0.9
1,365,462	+				+2.5
1,365,462	+				+0.6
1,365,463	-				-0.1
1,365,463	-				-1.9
1,365,463	-				+0.5
1,365,545	+		PP_1190	0.15	+1.1
1,365,546	-		PP_1190	0.15	+1.0
1,365,546	-		PP_1190	0.15	+1.0
1,365,741	-		PP_1190	0.57	+0.7
1,365,741	-		PP_1190	0.57	+1.5
1,365,821	+		PP_1190	0.74	+1.7
1,365,822	-		PP_1190	0.74	+1.5
1,365,905	+				+0.8
1,365,906	-				+2.0
1,365,984	-				+0.6
1,365,990	+				+0.6
1,365,990	+				+0.4
1,366,007	-				-0.0
1,366,079	+		PP_1191	0.13	+0.7
1,366,079	+		PP_1191	0.13	+0.9
1,366,106	+		PP_1191	0.16	+1.2
1,366,106	+		PP_1191	0.16	+1.6
1,366,106	+		PP_1191	0.16	+1.2
1,366,107	-		PP_1191	0.17	+0.3
1,366,107	-		PP_1191	0.17	+0.6
1,366,107	-		PP_1191	0.17	-2.1
1,366,107	-		PP_1191	0.17	+1.0