Strain Fitness in Pseudomonas putida KT2440 around PP_1127

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
1,290,523	-		PP_1126	0.76	-0.4
1,290,541	+		PP_1126	0.77	+0.2
1,290,555	+		PP_1126	0.78	-0.2
1,290,556	-		PP_1126	0.78	+0.1
1,290,632	+		PP_1126	0.81	+1.3
1,290,632	+		PP_1126	0.81	-1.2
1,290,632	+		PP_1126	0.81	-0.0
1,290,632	+		PP_1126	0.81	-0.0
1,290,633	-		PP_1126	0.81	+1.5
1,290,633	-		PP_1126	0.81	+1.2
1,290,673	+		PP_1126	0.83	-2.2
1,290,674	-		PP_1126	0.83	-0.0
1,290,674	-		PP_1126	0.83	-1.3
1,290,674	-		PP_1126	0.83	+0.5
1,290,690	+		PP_1126	0.84	-0.4
1,290,690	+		PP_1126	0.84	+0.3
1,290,691	-		PP_1126	0.84	-0.0
1,290,691	-		PP_1126	0.84	-0.3
1,290,691	-		PP_1126	0.84	-0.7
1,290,691	-		PP_1126	0.84	-0.8
1,290,692	+		PP_1126	0.84	+0.5
1,290,692	+		PP_1126	0.84	+0.1
1,290,693	-		PP_1126	0.84	+0.5
1,290,715	-		PP_1126	0.85	+1.0
1,290,846	+				+1.4
1,290,846	+				+1.1
1,290,847	-				+1.6
1,290,847	-				+0.6
1,290,910	-				+1.4
1,290,910	-				-0.5
1,290,983	+				+0.6
1,291,160	+				+0.5
1,291,160	+				-0.2
1,291,160	+				+0.3
1,291,161	-				+0.7
1,291,161	-				+0.5
1,291,161	-				+0.5
1,291,228	+				-0.0
1,291,228	+				+0.5
1,291,228	+				+0.8
1,291,229	-				-0.4
1,291,229	-				-0.2
1,291,229	-				+1.4
1,291,229	-				+0.7
1,291,229	-				+0.9
1,291,229	-				+1.7
1,291,389	+		PP_1127	0.16	+1.1
1,291,492	+		PP_1127	0.25	+2.5
1,291,493	-		PP_1127	0.25	+1.0
1,291,493	-		PP_1127	0.25	+0.8
1,291,493	-		PP_1127	0.25	+0.2
1,291,493	-		PP_1127	0.25	+0.2
1,291,493	-		PP_1127	0.25	-0.4
1,291,603	+		PP_1127	0.34	+0.6
1,291,603	+		PP_1127	0.34	+0.6
1,291,603	+		PP_1127	0.34	+2.0
1,291,603	+		PP_1127	0.34	+0.4
1,291,603	+		PP_1127	0.34	+0.6
1,291,603	+		PP_1127	0.34	-1.2
1,291,603	+		PP_1127	0.34	+1.3
1,291,603	+		PP_1127	0.34	+0.7
1,291,604	-		PP_1127	0.34	+0.4
1,291,604	-		PP_1127	0.34	+0.4
1,291,926	+		PP_1127	0.62	+1.3
1,291,926	+		PP_1127	0.62	+1.0
1,292,032	+		PP_1127	0.72	+0.1
1,292,032	+		PP_1127	0.72	+0.1
1,292,032	+		PP_1127	0.72	-0.1
1,292,032	+		PP_1127	0.72	+0.8
1,292,032	+		PP_1127	0.72	-0.0
1,292,033	-		PP_1127	0.72	+0.2
1,292,033	-		PP_1127	0.72	+1.0
1,292,097	+		PP_1127	0.77	+1.0
1,292,097	+		PP_1127	0.77	+0.6
1,292,098	-		PP_1127	0.77	+0.4
1,292,098	-		PP_1127	0.77	+1.2
1,292,098	-		PP_1127	0.77	+0.6
1,292,098	-		PP_1127	0.77	-0.1
1,292,115	+		PP_1127	0.79	+0.4
1,292,115	+		PP_1127	0.79	-1.3
1,292,116	-		PP_1127	0.79	+0.9
1,292,296	+				+0.5
1,292,296	+				+0.9
1,292,296	+				-1.3
1,292,297	-				-0.0
1,292,330	+				+0.7
1,292,474	+				-0.6
1,292,475	-				+1.5
1,292,846	-		PP_1128	0.43	+2.1
1,292,846	-		PP_1128	0.43	+3.1
1,292,846	-		PP_1128	0.43	-0.8
1,292,846	-		PP_1128	0.43	+1.5
1,292,846	-		PP_1128	0.43	+1.0
1,292,945	+		PP_1128	0.53	-0.3
1,293,188	-		PP_1128	0.76	+3.4
1,293,308	+		PP_1128	0.88	-1.0
1,293,308	+		PP_1128	0.88	-0.5