Experiment: P. putida PUT10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0789 and PP_0790 overlap by 4 nucleotides PP_0790 and PP_0791 are separated by 44 nucleotides PP_0791 and PP_0792 are separated by 2 nucleotides
PP_0789: PP_0789 - N-acetyl-anhydromuramyl-L-alanine-amidase, at 905,990 to 906,562
_0789
PP_0790: PP_0790 - Inner membrane protein AmpE, at 906,559 to 907,389
_0790
PP_0791: PP_0791 - putative hydrolase, at 907,434 to 908,210
_0791
PP_0792: PP_0792 - catabolite repressor-activator, DNA-binding transcriptional dual regulator, at 908,213 to 909,208
_0792
Position (kb) 907
908
909 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 906.643 kb on - strand, within PP_0790 at 906.643 kb on - strand, within PP_0790 at 906.766 kb on + strand, within PP_0790 at 906.766 kb on + strand, within PP_0790 at 906.767 kb on - strand, within PP_0790 at 906.767 kb on - strand, within PP_0790 at 906.809 kb on - strand, within PP_0790 at 906.960 kb on + strand, within PP_0790 at 906.961 kb on - strand, within PP_0790 at 906.961 kb on - strand, within PP_0790 at 907.063 kb on - strand, within PP_0790 at 907.063 kb on - strand, within PP_0790 at 907.554 kb on + strand, within PP_0791 at 907.564 kb on + strand, within PP_0791 at 907.705 kb on + strand, within PP_0791 at 907.706 kb on - strand, within PP_0791 at 907.724 kb on - strand, within PP_0791 at 907.724 kb on - strand, within PP_0791 at 907.724 kb on - strand, within PP_0791 at 907.769 kb on - strand, within PP_0791 at 907.769 kb on - strand, within PP_0791 at 907.769 kb on - strand, within PP_0791 at 907.904 kb on - strand, within PP_0791 at 907.906 kb on + strand, within PP_0791 at 907.907 kb on - strand, within PP_0791 at 907.907 kb on - strand, within PP_0791 at 907.907 kb on - strand, within PP_0791 at 907.927 kb on - strand, within PP_0791 at 907.927 kb on - strand, within PP_0791 at 907.927 kb on - strand, within PP_0791 at 907.935 kb on + strand, within PP_0791 at 908.012 kb on - strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.093 kb on - strand, within PP_0791 at 908.093 kb on - strand, within PP_0791 at 908.271 kb on + strand at 908.272 kb on - strand at 908.272 kb on - strand at 908.466 kb on + strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.566 kb on - strand, within PP_0792 at 908.586 kb on + strand, within PP_0792 at 908.586 kb on + strand, within PP_0792 at 908.587 kb on - strand, within PP_0792 at 908.809 kb on - strand, within PP_0792 at 908.934 kb on + strand, within PP_0792 at 908.982 kb on + strand, within PP_0792 at 908.983 kb on - strand, within PP_0792 at 908.983 kb on - strand, within PP_0792 at 909.029 kb on - strand, within PP_0792 at 909.109 kb on + strand at 909.153 kb on + strand at 909.153 kb on + strand at 909.153 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1 remove 906,643 - PP_0790 0.10 +0.4 906,643 - PP_0790 0.10 +1.0 906,766 + PP_0790 0.25 +1.2 906,766 + PP_0790 0.25 +0.0 906,767 - PP_0790 0.25 -0.0 906,767 - PP_0790 0.25 -0.2 906,809 - PP_0790 0.30 +0.0 906,960 + PP_0790 0.48 -0.2 906,961 - PP_0790 0.48 +0.9 906,961 - PP_0790 0.48 +0.5 907,063 - PP_0790 0.61 -0.1 907,063 - PP_0790 0.61 +0.5 907,554 + PP_0791 0.15 +0.4 907,564 + PP_0791 0.17 -0.2 907,705 + PP_0791 0.35 +0.2 907,706 - PP_0791 0.35 -1.7 907,724 - PP_0791 0.37 -0.2 907,724 - PP_0791 0.37 +0.6 907,724 - PP_0791 0.37 -0.1 907,769 - PP_0791 0.43 -2.1 907,769 - PP_0791 0.43 +0.2 907,769 - PP_0791 0.43 -1.1 907,904 - PP_0791 0.60 -0.6 907,906 + PP_0791 0.61 +0.4 907,907 - PP_0791 0.61 -0.3 907,907 - PP_0791 0.61 +0.2 907,907 - PP_0791 0.61 -4.2 907,927 - PP_0791 0.63 +1.0 907,927 - PP_0791 0.63 -0.1 907,927 - PP_0791 0.63 -2.2 907,935 + PP_0791 0.64 +0.6 908,012 - PP_0791 0.74 +0.1 908,092 + PP_0791 0.85 -0.3 908,092 + PP_0791 0.85 +0.0 908,092 + PP_0791 0.85 +0.2 908,092 + PP_0791 0.85 -1.1 908,093 - PP_0791 0.85 +0.6 908,093 - PP_0791 0.85 -0.1 908,271 + -0.6 908,272 - +0.2 908,272 - +0.1 908,466 + PP_0792 0.25 -2.8 908,467 - PP_0792 0.26 -0.6 908,467 - PP_0792 0.26 +1.3 908,467 - PP_0792 0.26 +0.1 908,467 - PP_0792 0.26 -0.7 908,467 - PP_0792 0.26 -0.9 908,566 - PP_0792 0.35 +0.2 908,586 + PP_0792 0.37 -0.2 908,586 + PP_0792 0.37 +0.2 908,587 - PP_0792 0.38 -0.5 908,809 - PP_0792 0.60 +0.4 908,934 + PP_0792 0.72 +0.3 908,982 + PP_0792 0.77 -1.6 908,983 - PP_0792 0.77 +1.0 908,983 - PP_0792 0.77 +0.9 909,029 - PP_0792 0.82 +0.2 909,109 + +0.7 909,153 + +0.2 909,153 + -1.4 909,153 + +0.9
Or see this region's nucleotide sequence