Experiment: P. putida PUT10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0714 and PP_0715 are separated by 3 nucleotides PP_0715 and PP_0716 overlap by 4 nucleotides
PP_0714: PP_0714 - Transporter, PerM family, at 829,626 to 830,723
_0714
PP_0715: PP_0715 - Outer membrane efflux protein, at 830,727 to 832,241
_0715
PP_0716: PP_0716 - HlyD family secretion protein, at 832,238 to 833,335
_0716
Position (kb)
830
831
832
833 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 829.786 kb on - strand, within PP_0714 at 829.883 kb on + strand, within PP_0714 at 829.883 kb on + strand, within PP_0714 at 829.883 kb on + strand, within PP_0714 at 829.884 kb on - strand, within PP_0714 at 829.884 kb on - strand, within PP_0714 at 829.887 kb on + strand, within PP_0714 at 829.887 kb on + strand, within PP_0714 at 829.887 kb on + strand, within PP_0714 at 829.888 kb on - strand, within PP_0714 at 829.888 kb on - strand, within PP_0714 at 829.888 kb on - strand, within PP_0714 at 830.054 kb on - strand, within PP_0714 at 830.054 kb on - strand, within PP_0714 at 830.347 kb on + strand, within PP_0714 at 830.445 kb on + strand, within PP_0714 at 830.445 kb on + strand, within PP_0714 at 830.445 kb on + strand, within PP_0714 at 830.445 kb on + strand, within PP_0714 at 830.445 kb on + strand, within PP_0714 at 830.445 kb on + strand, within PP_0714 at 830.445 kb on + strand, within PP_0714 at 830.445 kb on + strand, within PP_0714 at 830.445 kb on + strand, within PP_0714 at 830.445 kb on + strand, within PP_0714 at 830.446 kb on - strand, within PP_0714 at 830.446 kb on - strand, within PP_0714 at 830.446 kb on - strand, within PP_0714 at 830.496 kb on + strand, within PP_0714 at 830.496 kb on + strand, within PP_0714 at 830.497 kb on - strand, within PP_0714 at 830.497 kb on - strand, within PP_0714 at 830.564 kb on - strand, within PP_0714 at 830.564 kb on - strand, within PP_0714 at 830.578 kb on + strand, within PP_0714 at 830.593 kb on + strand, within PP_0714 at 830.593 kb on + strand, within PP_0714 at 830.593 kb on + strand, within PP_0714 at 830.593 kb on + strand, within PP_0714 at 830.593 kb on + strand, within PP_0714 at 830.594 kb on - strand, within PP_0714 at 830.594 kb on - strand, within PP_0714 at 830.594 kb on - strand, within PP_0714 at 830.594 kb on - strand, within PP_0714 at 830.631 kb on - strand at 830.641 kb on + strand at 830.658 kb on + strand at 830.658 kb on + strand at 830.658 kb on + strand at 830.658 kb on + strand at 830.658 kb on + strand at 830.658 kb on + strand at 830.658 kb on + strand at 830.658 kb on + strand at 830.659 kb on - strand at 830.743 kb on - strand at 830.743 kb on - strand at 831.060 kb on + strand, within PP_0715 at 831.083 kb on + strand, within PP_0715 at 831.219 kb on + strand, within PP_0715 at 831.219 kb on + strand, within PP_0715 at 831.219 kb on + strand, within PP_0715 at 831.219 kb on + strand, within PP_0715 at 831.220 kb on - strand, within PP_0715 at 831.220 kb on - strand, within PP_0715 at 831.264 kb on + strand, within PP_0715 at 831.264 kb on + strand, within PP_0715 at 831.265 kb on - strand, within PP_0715 at 831.265 kb on - strand, within PP_0715 at 831.408 kb on + strand, within PP_0715 at 831.408 kb on + strand, within PP_0715 at 831.409 kb on - strand, within PP_0715 at 831.409 kb on - strand, within PP_0715 at 831.469 kb on + strand, within PP_0715 at 831.469 kb on + strand, within PP_0715 at 831.469 kb on + strand, within PP_0715 at 831.469 kb on + strand, within PP_0715 at 831.469 kb on + strand, within PP_0715 at 831.469 kb on + strand, within PP_0715 at 831.470 kb on - strand, within PP_0715 at 831.470 kb on - strand, within PP_0715 at 831.470 kb on - strand, within PP_0715 at 831.569 kb on - strand, within PP_0715 at 831.569 kb on - strand, within PP_0715 at 831.569 kb on - strand, within PP_0715 at 831.569 kb on - strand, within PP_0715 at 831.569 kb on - strand, within PP_0715 at 831.569 kb on - strand, within PP_0715 at 831.780 kb on + strand, within PP_0715 at 831.802 kb on + strand, within PP_0715 at 831.802 kb on + strand, within PP_0715 at 831.802 kb on + strand, within PP_0715 at 831.802 kb on + strand, within PP_0715 at 831.802 kb on + strand, within PP_0715 at 831.803 kb on - strand, within PP_0715 at 831.824 kb on - strand, within PP_0715 at 831.843 kb on + strand, within PP_0715 at 832.054 kb on - strand, within PP_0715 at 832.054 kb on - strand, within PP_0715 at 832.098 kb on + strand at 832.098 kb on + strand at 832.098 kb on + strand at 832.099 kb on - strand at 832.099 kb on - strand at 832.099 kb on - strand at 832.099 kb on - strand at 832.287 kb on + strand at 832.288 kb on - strand at 832.288 kb on - strand at 832.328 kb on + strand at 832.328 kb on + strand at 832.329 kb on - strand at 832.348 kb on + strand, within PP_0716 at 832.348 kb on + strand, within PP_0716 at 832.348 kb on + strand, within PP_0716 at 832.349 kb on - strand, within PP_0716 at 832.349 kb on - strand, within PP_0716 at 832.355 kb on + strand, within PP_0716 at 832.382 kb on + strand, within PP_0716 at 832.382 kb on + strand, within PP_0716 at 832.382 kb on + strand, within PP_0716 at 832.382 kb on + strand, within PP_0716 at 832.383 kb on - strand, within PP_0716 at 832.383 kb on - strand, within PP_0716 at 832.383 kb on - strand, within PP_0716 at 832.567 kb on + strand, within PP_0716 at 832.853 kb on - strand, within PP_0716 at 832.913 kb on + strand, within PP_0716 at 832.913 kb on + strand, within PP_0716 at 832.913 kb on + strand, within PP_0716 at 832.914 kb on - strand, within PP_0716 at 832.928 kb on - strand, within PP_0716 at 832.951 kb on + strand, within PP_0716 at 832.969 kb on - strand, within PP_0716 at 832.969 kb on - strand, within PP_0716 at 833.068 kb on + strand, within PP_0716 at 833.069 kb on - strand, within PP_0716 at 833.069 kb on - strand, within PP_0716 at 833.069 kb on - strand, within PP_0716 at 833.069 kb on - strand, within PP_0716 at 833.070 kb on + strand, within PP_0716 at 833.071 kb on - strand, within PP_0716 at 833.071 kb on - strand, within PP_0716 at 833.071 kb on - strand, within PP_0716 at 833.141 kb on - strand, within PP_0716 at 833.183 kb on - strand, within PP_0716
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1 remove 829,786 - PP_0714 0.15 +1.4 829,883 + PP_0714 0.23 +1.8 829,883 + PP_0714 0.23 +0.3 829,883 + PP_0714 0.23 +1.5 829,884 - PP_0714 0.23 -0.3 829,884 - PP_0714 0.23 +0.5 829,887 + PP_0714 0.24 -0.6 829,887 + PP_0714 0.24 +0.2 829,887 + PP_0714 0.24 -0.5 829,888 - PP_0714 0.24 -1.0 829,888 - PP_0714 0.24 +0.9 829,888 - PP_0714 0.24 -0.5 830,054 - PP_0714 0.39 -0.5 830,054 - PP_0714 0.39 +0.2 830,347 + PP_0714 0.66 -1.0 830,445 + PP_0714 0.75 -0.8 830,445 + PP_0714 0.75 -1.3 830,445 + PP_0714 0.75 +1.0 830,445 + PP_0714 0.75 +0.5 830,445 + PP_0714 0.75 -0.2 830,445 + PP_0714 0.75 +0.7 830,445 + PP_0714 0.75 +1.3 830,445 + PP_0714 0.75 +0.2 830,445 + PP_0714 0.75 +0.4 830,445 + PP_0714 0.75 -0.1 830,446 - PP_0714 0.75 +0.2 830,446 - PP_0714 0.75 -0.2 830,446 - PP_0714 0.75 +0.4 830,496 + PP_0714 0.79 +0.2 830,496 + PP_0714 0.79 +0.1 830,497 - PP_0714 0.79 +0.8 830,497 - PP_0714 0.79 -0.0 830,564 - PP_0714 0.85 -1.3 830,564 - PP_0714 0.85 +1.2 830,578 + PP_0714 0.87 +0.3 830,593 + PP_0714 0.88 +0.5 830,593 + PP_0714 0.88 -1.3 830,593 + PP_0714 0.88 +0.0 830,593 + PP_0714 0.88 +0.3 830,593 + PP_0714 0.88 +0.5 830,594 - PP_0714 0.88 +0.5 830,594 - PP_0714 0.88 +0.3 830,594 - PP_0714 0.88 -0.4 830,594 - PP_0714 0.88 -0.3 830,631 - +0.2 830,641 + -0.2 830,658 + +0.0 830,658 + +1.7 830,658 + +0.6 830,658 + +0.1 830,658 + +0.4 830,658 + +0.0 830,658 + -3.7 830,658 + -1.1 830,659 - +1.2 830,743 - -1.3 830,743 - +0.5 831,060 + PP_0715 0.22 +0.2 831,083 + PP_0715 0.23 +1.5 831,219 + PP_0715 0.32 -1.8 831,219 + PP_0715 0.32 +0.7 831,219 + PP_0715 0.32 -1.5 831,219 + PP_0715 0.32 +0.3 831,220 - PP_0715 0.33 +0.2 831,220 - PP_0715 0.33 -0.4 831,264 + PP_0715 0.35 +0.5 831,264 + PP_0715 0.35 -1.1 831,265 - PP_0715 0.36 -0.1 831,265 - PP_0715 0.36 -3.1 831,408 + PP_0715 0.45 +0.4 831,408 + PP_0715 0.45 -0.0 831,409 - PP_0715 0.45 -0.4 831,409 - PP_0715 0.45 -1.2 831,469 + PP_0715 0.49 +0.2 831,469 + PP_0715 0.49 -1.7 831,469 + PP_0715 0.49 +0.7 831,469 + PP_0715 0.49 -0.2 831,469 + PP_0715 0.49 -0.4 831,469 + PP_0715 0.49 -0.7 831,470 - PP_0715 0.49 -0.3 831,470 - PP_0715 0.49 +0.3 831,470 - PP_0715 0.49 +0.2 831,569 - PP_0715 0.56 +1.2 831,569 - PP_0715 0.56 +0.1 831,569 - PP_0715 0.56 -0.8 831,569 - PP_0715 0.56 +0.2 831,569 - PP_0715 0.56 -0.5 831,569 - PP_0715 0.56 +0.0 831,780 + PP_0715 0.70 +0.3 831,802 + PP_0715 0.71 +0.6 831,802 + PP_0715 0.71 -1.7 831,802 + PP_0715 0.71 -1.8 831,802 + PP_0715 0.71 +0.4 831,802 + PP_0715 0.71 +0.7 831,803 - PP_0715 0.71 +0.1 831,824 - PP_0715 0.72 -0.9 831,843 + PP_0715 0.74 +0.6 832,054 - PP_0715 0.88 +0.2 832,054 - PP_0715 0.88 +0.0 832,098 + +0.2 832,098 + +0.1 832,098 + -1.5 832,099 - -0.1 832,099 - +0.2 832,099 - -0.9 832,099 - -0.4 832,287 + +0.5 832,288 - -0.5 832,288 - +0.2 832,328 + +1.4 832,328 + -0.2 832,329 - +1.4 832,348 + PP_0716 0.10 -2.8 832,348 + PP_0716 0.10 +2.8 832,348 + PP_0716 0.10 +0.7 832,349 - PP_0716 0.10 +0.3 832,349 - PP_0716 0.10 +1.4 832,355 + PP_0716 0.11 -1.0 832,382 + PP_0716 0.13 -1.3 832,382 + PP_0716 0.13 -1.1 832,382 + PP_0716 0.13 +0.8 832,382 + PP_0716 0.13 -0.3 832,383 - PP_0716 0.13 -0.1 832,383 - PP_0716 0.13 +0.4 832,383 - PP_0716 0.13 +0.3 832,567 + PP_0716 0.30 -0.2 832,853 - PP_0716 0.56 +0.4 832,913 + PP_0716 0.61 -0.3 832,913 + PP_0716 0.61 +1.4 832,913 + PP_0716 0.61 +0.5 832,914 - PP_0716 0.62 +0.6 832,928 - PP_0716 0.63 +0.3 832,951 + PP_0716 0.65 -0.3 832,969 - PP_0716 0.67 +1.4 832,969 - PP_0716 0.67 +0.6 833,068 + PP_0716 0.76 +0.5 833,069 - PP_0716 0.76 +0.4 833,069 - PP_0716 0.76 +0.3 833,069 - PP_0716 0.76 -0.5 833,069 - PP_0716 0.76 +0.2 833,070 + PP_0716 0.76 +0.8 833,071 - PP_0716 0.76 +0.6 833,071 - PP_0716 0.76 -0.7 833,071 - PP_0716 0.76 +0.6 833,141 - PP_0716 0.82 -0.4 833,183 - PP_0716 0.86 -0.8
Or see this region's nucleotide sequence