Strain Fitness in Pseudomonas putida KT2440 around PP_0708

Experiment: P. putida PUT10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0707 and PP_0708 are separated by 131 nucleotidesPP_0708 and PP_0709 are separated by 13 nucleotides PP_0707: PP_0707 - putative membrane protein, at 820,630 to 823,041 _0707 PP_0708: PP_0708 - putative Betaine-aldehyde dehydrogenase, at 823,173 to 824,603 _0708 PP_0709: PP_0709 - Transporter, NCS1 nucleoside transporter family, at 824,617 to 826,116 _0709 Position (kb) 823 824 825Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 822.438 kb on + strand, within PP_0707at 822.438 kb on + strand, within PP_0707at 822.438 kb on + strand, within PP_0707at 822.438 kb on + strand, within PP_0707at 822.439 kb on - strand, within PP_0707at 822.601 kb on - strand, within PP_0707at 822.735 kb on + strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.797 kb on - strand, within PP_0707at 822.889 kb on + strandat 822.889 kb on + strandat 822.890 kb on - strandat 822.890 kb on - strandat 823.039 kb on + strandat 823.191 kb on + strandat 823.191 kb on + strandat 823.210 kb on + strandat 823.371 kb on + strand, within PP_0708at 823.371 kb on + strand, within PP_0708at 823.371 kb on + strand, within PP_0708at 823.371 kb on + strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.376 kb on + strand, within PP_0708at 823.377 kb on - strand, within PP_0708at 823.377 kb on - strand, within PP_0708at 823.377 kb on - strand, within PP_0708at 823.505 kb on + strand, within PP_0708at 823.507 kb on + strand, within PP_0708at 823.507 kb on + strandat 823.508 kb on - strand, within PP_0708at 823.508 kb on - strand, within PP_0708at 823.508 kb on - strand, within PP_0708at 823.597 kb on + strand, within PP_0708at 823.597 kb on + strand, within PP_0708at 823.597 kb on + strand, within PP_0708at 823.598 kb on - strand, within PP_0708at 823.598 kb on - strand, within PP_0708at 823.598 kb on - strand, within PP_0708at 824.047 kb on + strand, within PP_0708at 824.273 kb on - strand, within PP_0708at 824.337 kb on - strand, within PP_0708at 824.585 kb on + strandat 824.585 kb on + strandat 824.586 kb on - strandat 824.586 kb on - strandat 824.587 kb on + strandat 824.587 kb on + strandat 824.588 kb on - strandat 824.588 kb on - strandat 824.646 kb on + strandat 824.646 kb on + strandat 824.693 kb on + strandat 824.735 kb on + strandat 824.735 kb on + strandat 824.736 kb on - strandat 824.906 kb on + strand, within PP_0709at 824.907 kb on - strand, within PP_0709at 824.907 kb on - strand, within PP_0709at 824.936 kb on - strand, within PP_0709at 824.936 kb on - strand, within PP_0709at 824.958 kb on - strand, within PP_0709at 824.958 kb on - strand, within PP_0709at 824.958 kb on - strand, within PP_0709at 825.018 kb on + strand, within PP_0709at 825.018 kb on + strand, within PP_0709at 825.019 kb on - strand, within PP_0709at 825.019 kb on - strand, within PP_0709at 825.019 kb on - strand, within PP_0709at 825.044 kb on - strand, within PP_0709at 825.044 kb on - strand, within PP_0709at 825.118 kb on - strand, within PP_0709at 825.176 kb on + strand, within PP_0709at 825.176 kb on + strand, within PP_0709at 825.176 kb on + strand, within PP_0709at 825.176 kb on + strand, within PP_0709at 825.177 kb on - strand, within PP_0709at 825.246 kb on + strand, within PP_0709at 825.247 kb on - strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.293 kb on + strand, within PP_0709at 825.294 kb on - strand, within PP_0709at 825.294 kb on - strand, within PP_0709at 825.327 kb on + strand, within PP_0709at 825.327 kb on + strand, within PP_0709at 825.328 kb on - strand, within PP_0709at 825.419 kb on + strand, within PP_0709at 825.420 kb on - strand, within PP_0709

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1
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822,438 + PP_0707 0.75 +0.2
822,438 + PP_0707 0.75 +0.6
822,438 + PP_0707 0.75 +0.6
822,438 + PP_0707 0.75 -2.4
822,439 - PP_0707 0.75 -0.5
822,601 - PP_0707 0.82 -1.0
822,735 + PP_0707 0.87 +1.3
822,736 - PP_0707 0.87 -0.4
822,736 - PP_0707 0.87 +0.8
822,736 - PP_0707 0.87 -0.4
822,736 - PP_0707 0.87 -0.5
822,736 - PP_0707 0.87 -1.7
822,797 - PP_0707 0.90 +0.1
822,889 + -0.6
822,889 + +0.2
822,890 - +0.3
822,890 - -0.1
823,039 + +0.7
823,191 + -0.2
823,191 + +0.0
823,210 + +1.8
823,371 + PP_0708 0.14 -0.2
823,371 + PP_0708 0.14 +0.6
823,371 + PP_0708 0.14 +1.0
823,371 + PP_0708 0.14 -0.3
823,372 - PP_0708 0.14 -0.5
823,372 - PP_0708 0.14 -0.3
823,372 - PP_0708 0.14 -0.3
823,372 - PP_0708 0.14 -0.4
823,372 - PP_0708 0.14 +0.7
823,376 + PP_0708 0.14 +1.1
823,377 - PP_0708 0.14 +0.7
823,377 - PP_0708 0.14 +1.8
823,377 - PP_0708 0.14 +0.4
823,505 + PP_0708 0.23 -0.8
823,507 + PP_0708 0.23 -1.9
823,507 + +0.5
823,508 - PP_0708 0.23 -0.9
823,508 - PP_0708 0.23 -1.6
823,508 - PP_0708 0.23 -1.1
823,597 + PP_0708 0.30 +0.7
823,597 + PP_0708 0.30 +0.0
823,597 + PP_0708 0.30 -0.5
823,598 - PP_0708 0.30 -1.6
823,598 - PP_0708 0.30 -1.2
823,598 - PP_0708 0.30 +0.7
824,047 + PP_0708 0.61 +0.3
824,273 - PP_0708 0.77 -0.8
824,337 - PP_0708 0.81 +0.7
824,585 + -0.4
824,585 + -0.1
824,586 - +0.3
824,586 - +0.2
824,587 + +1.1
824,587 + -0.9
824,588 - +1.2
824,588 - +0.6
824,646 + -0.3
824,646 + +1.3
824,693 + -0.3
824,735 + +0.5
824,735 + +0.8
824,736 - +1.1
824,906 + PP_0709 0.19 +1.3
824,907 - PP_0709 0.19 -1.2
824,907 - PP_0709 0.19 -0.2
824,936 - PP_0709 0.21 +1.1
824,936 - PP_0709 0.21 -3.0
824,958 - PP_0709 0.23 +0.9
824,958 - PP_0709 0.23 +0.2
824,958 - PP_0709 0.23 +0.2
825,018 + PP_0709 0.27 +0.7
825,018 + PP_0709 0.27 -0.3
825,019 - PP_0709 0.27 +0.1
825,019 - PP_0709 0.27 +0.1
825,019 - PP_0709 0.27 +0.6
825,044 - PP_0709 0.28 -1.2
825,044 - PP_0709 0.28 +0.1
825,118 - PP_0709 0.33 +0.4
825,176 + PP_0709 0.37 -1.8
825,176 + PP_0709 0.37 -0.0
825,176 + PP_0709 0.37 -0.0
825,176 + PP_0709 0.37 -0.6
825,177 - PP_0709 0.37 -0.5
825,246 + PP_0709 0.42 +0.3
825,247 - PP_0709 0.42 +0.2
825,275 + PP_0709 0.44 -0.0
825,275 + PP_0709 0.44 +0.5
825,275 + PP_0709 0.44 -0.0
825,275 + PP_0709 0.44 -2.6
825,275 + PP_0709 0.44 +0.2
825,275 + PP_0709 0.44 -0.4
825,276 - PP_0709 0.44 -1.5
825,276 - PP_0709 0.44 -1.2
825,276 - PP_0709 0.44 -0.9
825,276 - PP_0709 0.44 +1.3
825,276 - PP_0709 0.44 +0.3
825,276 - PP_0709 0.44 -0.5
825,276 - PP_0709 0.44 -1.1
825,276 - PP_0709 0.44 +0.1
825,293 + PP_0709 0.45 -2.0
825,294 - PP_0709 0.45 +0.4
825,294 - PP_0709 0.45 -0.6
825,327 + PP_0709 0.47 -0.1
825,327 + PP_0709 0.47 +0.7
825,328 - PP_0709 0.47 +0.2
825,419 + PP_0709 0.53 -1.0
825,420 - PP_0709 0.54 +2.0

Or see this region's nucleotide sequence