Experiment: P. putida PUT10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0574 and PP_0575 are separated by 118 nucleotides PP_0575 and PP_0576 are separated by 305 nucleotides PP_0576 and PP_0577 are separated by 19 nucleotides PP_0577 and PP_0578 overlap by 38 nucleotides
PP_0574: PP_0574 - DNA-binding response regulator, LuxR family, at 672,743 to 673,519
_0574
PP_0575: PP_0575 - conserved membrane protein of unknown function, at 673,638 to 674,108
_0575
PP_0576: PP_0576 - putative Lipoprotein, at 674,414 to 674,983
_0576
PP_0577: PP_0577 - conserved protein of unknown function, at 675,003 to 675,698
_0577
PP_0578: PP_0578 - putative Methyltransferase, at 675,661 to 676,410
_0578
Position (kb) 674
675 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.426 kb on - strand, within PP_0574 at 673.426 kb on - strand, within PP_0574 at 673.426 kb on - strand at 673.426 kb on - strand, within PP_0574 at 673.426 kb on - strand, within PP_0574 at 673.496 kb on + strand at 673.496 kb on + strand at 673.497 kb on - strand at 673.497 kb on - strand at 673.537 kb on + strand at 673.538 kb on - strand at 673.539 kb on + strand at 673.574 kb on + strand at 673.574 kb on + strand at 673.575 kb on - strand at 673.580 kb on + strand at 673.581 kb on - strand at 673.597 kb on + strand at 673.597 kb on + strand at 673.597 kb on + strand at 673.598 kb on - strand at 673.598 kb on - strand at 673.598 kb on - strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.602 kb on - strand at 673.602 kb on - strand at 673.602 kb on - strand at 673.612 kb on + strand at 673.612 kb on + strand at 673.612 kb on + strand at 673.613 kb on - strand at 673.613 kb on - strand at 673.613 kb on - strand at 673.674 kb on + strand at 673.681 kb on + strand at 673.740 kb on + strand, within PP_0575 at 673.741 kb on - strand, within PP_0575 at 673.795 kb on - strand, within PP_0575 at 673.831 kb on + strand, within PP_0575 at 673.831 kb on + strand, within PP_0575 at 673.832 kb on - strand, within PP_0575 at 673.832 kb on - strand, within PP_0575 at 673.903 kb on + strand, within PP_0575 at 673.904 kb on - strand, within PP_0575 at 673.904 kb on - strand, within PP_0575 at 673.904 kb on - strand, within PP_0575 at 674.041 kb on - strand, within PP_0575 at 674.176 kb on - strand at 674.176 kb on - strand at 674.282 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.297 kb on + strand at 674.297 kb on + strand at 674.297 kb on + strand at 674.297 kb on + strand at 674.298 kb on - strand at 674.364 kb on + strand at 674.416 kb on - strand at 674.436 kb on + strand at 674.436 kb on + strand at 674.437 kb on - strand at 674.461 kb on + strand at 674.462 kb on - strand at 674.502 kb on + strand, within PP_0576 at 674.537 kb on + strand, within PP_0576 at 674.538 kb on - strand, within PP_0576 at 674.592 kb on + strand, within PP_0576 at 674.593 kb on - strand, within PP_0576 at 674.593 kb on - strand, within PP_0576 at 674.593 kb on - strand, within PP_0576 at 674.616 kb on + strand, within PP_0576 at 674.616 kb on + strand, within PP_0576 at 674.616 kb on + strand, within PP_0576 at 674.616 kb on + strand, within PP_0576 at 674.617 kb on - strand, within PP_0576 at 674.668 kb on - strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.717 kb on + strand, within PP_0576 at 674.718 kb on - strand, within PP_0576 at 674.718 kb on - strand, within PP_0576 at 674.718 kb on - strand, within PP_0576 at 674.718 kb on - strand, within PP_0576 at 674.748 kb on - strand, within PP_0576 at 674.875 kb on + strand, within PP_0576 at 674.876 kb on - strand, within PP_0576 at 674.876 kb on - strand, within PP_0576 at 674.876 kb on - strand, within PP_0576 at 674.880 kb on + strand, within PP_0576 at 674.963 kb on + strand at 674.964 kb on - strand at 674.964 kb on - strand at 675.001 kb on + strand at 675.001 kb on + strand at 675.001 kb on + strand at 675.001 kb on + strand at 675.002 kb on - strand at 675.002 kb on - strand at 675.005 kb on - strand at 675.137 kb on - strand, within PP_0577 at 675.137 kb on - strand, within PP_0577 at 675.137 kb on - strand, within PP_0577 at 675.137 kb on - strand, within PP_0577 at 675.172 kb on + strand, within PP_0577 at 675.172 kb on + strand, within PP_0577 at 675.172 kb on + strand, within PP_0577 at 675.173 kb on - strand, within PP_0577 at 675.176 kb on + strand, within PP_0577 at 675.177 kb on - strand, within PP_0577 at 675.199 kb on + strand, within PP_0577 at 675.259 kb on + strand, within PP_0577 at 675.259 kb on + strand, within PP_0577 at 675.263 kb on - strand, within PP_0577 at 675.263 kb on - strand, within PP_0577 at 675.263 kb on - strand, within PP_0577 at 675.263 kb on - strand, within PP_0577 at 675.271 kb on + strand, within PP_0577 at 675.271 kb on + strand, within PP_0577 at 675.271 kb on + strand, within PP_0577 at 675.272 kb on - strand, within PP_0577 at 675.280 kb on + strand, within PP_0577 at 675.317 kb on + strand, within PP_0577 at 675.499 kb on + strand, within PP_0577 at 675.499 kb on + strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.631 kb on + strand at 675.631 kb on + strand at 675.640 kb on + strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.787 kb on - strand, within PP_0578 at 675.787 kb on - strand, within PP_0578 at 675.787 kb on - strand, within PP_0578 at 675.788 kb on + strand, within PP_0578 at 675.788 kb on + strand, within PP_0578 at 675.788 kb on + strand, within PP_0578 at 675.788 kb on + strand, within PP_0578 at 675.789 kb on - strand, within PP_0578 at 675.789 kb on - strand, within PP_0578 at 675.834 kb on + strand, within PP_0578 at 675.834 kb on + strand, within PP_0578 at 675.834 kb on + strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.977 kb on + strand, within PP_0578 at 675.977 kb on + strand, within PP_0578
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1 remove 673,425 + PP_0574 0.88 -0.8 673,425 + PP_0574 0.88 -0.1 673,425 + PP_0574 0.88 +0.6 673,425 + PP_0574 0.88 +0.5 673,425 + PP_0574 0.88 -0.1 673,426 - PP_0574 0.88 -0.1 673,426 - PP_0574 0.88 -1.3 673,426 - +0.7 673,426 - PP_0574 0.88 +0.3 673,426 - PP_0574 0.88 +0.3 673,496 + +0.3 673,496 + +0.4 673,497 - -0.8 673,497 - -0.7 673,537 + -1.0 673,538 - +0.6 673,539 + -0.1 673,574 + +0.4 673,574 + +0.8 673,575 - +0.6 673,580 + +0.4 673,581 - -1.5 673,597 + -0.2 673,597 + +0.5 673,597 + -1.5 673,598 - -1.5 673,598 - -0.6 673,598 - +1.0 673,601 + -0.1 673,601 + +1.6 673,601 + +0.1 673,601 + +0.0 673,601 + +0.6 673,601 + +0.5 673,601 + +0.8 673,602 - -3.0 673,602 - -0.4 673,602 - -0.3 673,612 + +0.6 673,612 + +0.1 673,612 + +0.2 673,613 - +0.5 673,613 - -0.0 673,613 - -2.1 673,674 + +0.4 673,681 + +0.5 673,740 + PP_0575 0.22 -0.2 673,741 - PP_0575 0.22 -1.1 673,795 - PP_0575 0.33 -0.0 673,831 + PP_0575 0.41 +1.0 673,831 + PP_0575 0.41 +0.3 673,832 - PP_0575 0.41 +0.1 673,832 - PP_0575 0.41 +0.3 673,903 + PP_0575 0.56 +1.0 673,904 - PP_0575 0.56 -0.4 673,904 - PP_0575 0.56 -0.5 673,904 - PP_0575 0.56 -1.1 674,041 - PP_0575 0.86 -1.9 674,176 - +0.1 674,176 - -0.4 674,282 + +0.3 674,293 + +0.2 674,293 + -1.0 674,293 + +0.2 674,293 + -0.1 674,293 + -0.9 674,293 + +0.4 674,294 - +1.0 674,294 - +0.8 674,294 - -0.3 674,294 - -0.4 674,294 - +0.4 674,294 - -0.5 674,294 - -0.8 674,294 - +0.6 674,294 - -1.3 674,297 + +0.4 674,297 + -0.6 674,297 + +0.8 674,297 + +0.9 674,298 - +0.7 674,364 + +0.1 674,416 - -0.1 674,436 + -0.1 674,436 + +1.4 674,437 - +0.1 674,461 + +0.0 674,462 - +0.2 674,502 + PP_0576 0.15 -0.1 674,537 + PP_0576 0.22 +0.3 674,538 - PP_0576 0.22 +0.6 674,592 + PP_0576 0.31 -0.9 674,593 - PP_0576 0.31 -0.6 674,593 - PP_0576 0.31 +0.5 674,593 - PP_0576 0.31 +0.2 674,616 + PP_0576 0.35 +0.3 674,616 + PP_0576 0.35 +0.0 674,616 + PP_0576 0.35 -2.3 674,616 + PP_0576 0.35 +0.6 674,617 - PP_0576 0.36 -0.1 674,668 - PP_0576 0.45 +0.6 674,709 + PP_0576 0.52 +0.6 674,709 + PP_0576 0.52 +0.3 674,709 + PP_0576 0.52 -0.4 674,709 + PP_0576 0.52 +0.6 674,709 + PP_0576 0.52 -0.1 674,710 - PP_0576 0.52 -1.3 674,710 - PP_0576 0.52 +0.4 674,710 - PP_0576 0.52 +0.7 674,710 - PP_0576 0.52 +0.1 674,710 - PP_0576 0.52 +0.2 674,710 - PP_0576 0.52 +0.0 674,710 - PP_0576 0.52 -0.7 674,717 + PP_0576 0.53 +1.2 674,718 - PP_0576 0.53 +1.1 674,718 - PP_0576 0.53 +0.5 674,718 - PP_0576 0.53 -0.5 674,718 - PP_0576 0.53 +0.2 674,748 - PP_0576 0.59 -0.6 674,875 + PP_0576 0.81 -0.2 674,876 - PP_0576 0.81 -1.2 674,876 - PP_0576 0.81 -0.2 674,876 - PP_0576 0.81 -2.5 674,880 + PP_0576 0.82 +0.4 674,963 + -0.3 674,964 - -0.2 674,964 - -0.5 675,001 + -1.1 675,001 + +0.3 675,001 + -1.3 675,001 + +1.3 675,002 - +0.3 675,002 - +0.2 675,005 - -1.1 675,137 - PP_0577 0.19 -0.4 675,137 - PP_0577 0.19 +0.6 675,137 - PP_0577 0.19 -1.5 675,137 - PP_0577 0.19 -0.5 675,172 + PP_0577 0.24 -2.1 675,172 + PP_0577 0.24 -0.6 675,172 + PP_0577 0.24 +0.8 675,173 - PP_0577 0.24 +0.1 675,176 + PP_0577 0.25 +0.8 675,177 - PP_0577 0.25 -0.2 675,199 + PP_0577 0.28 +1.1 675,259 + PP_0577 0.37 +0.9 675,259 + PP_0577 0.37 +0.7 675,263 - PP_0577 0.37 +1.4 675,263 - PP_0577 0.37 +0.4 675,263 - PP_0577 0.37 +0.1 675,263 - PP_0577 0.37 +0.5 675,271 + PP_0577 0.39 +0.8 675,271 + PP_0577 0.39 -0.7 675,271 + PP_0577 0.39 -0.4 675,272 - PP_0577 0.39 +0.8 675,280 + PP_0577 0.40 +0.5 675,317 + PP_0577 0.45 -1.1 675,499 + PP_0577 0.71 +1.1 675,499 + PP_0577 0.71 +0.7 675,569 - PP_0577 0.81 +0.2 675,569 - PP_0577 0.81 +0.2 675,569 - PP_0577 0.81 +0.1 675,569 - PP_0577 0.81 +0.3 675,569 - PP_0577 0.81 +0.4 675,631 + +1.3 675,631 + -0.0 675,640 + +1.4 675,641 - +1.7 675,641 - -1.5 675,641 - +0.7 675,641 - +0.9 675,641 - +0.5 675,641 - +0.1 675,786 + PP_0578 0.17 -1.1 675,786 + PP_0578 0.17 +1.7 675,786 + PP_0578 0.17 -0.4 675,786 + PP_0578 0.17 -0.7 675,786 + PP_0578 0.17 +0.3 675,786 + PP_0578 0.17 -1.0 675,786 + PP_0578 0.17 -0.5 675,787 - PP_0578 0.17 +0.7 675,787 - PP_0578 0.17 -0.3 675,787 - PP_0578 0.17 +0.7 675,788 + PP_0578 0.17 +0.2 675,788 + PP_0578 0.17 +0.2 675,788 + PP_0578 0.17 -1.9 675,788 + PP_0578 0.17 -0.3 675,789 - PP_0578 0.17 +0.7 675,789 - PP_0578 0.17 -1.0 675,834 + PP_0578 0.23 +0.1 675,834 + PP_0578 0.23 +0.3 675,834 + PP_0578 0.23 +0.9 675,835 - PP_0578 0.23 -0.0 675,835 - PP_0578 0.23 -2.3 675,835 - PP_0578 0.23 -0.1 675,977 + PP_0578 0.42 +0.3 675,977 + PP_0578 0.42 -0.6
Or see this region's nucleotide sequence