Strain Fitness in Pseudomonas putida KT2440 around PP_0564

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
655,624	+		PP_0563	0.47	-1.0
655,625	-		PP_0563	0.47	+0.3
655,625	-		PP_0563	0.47	+1.0
655,625	-		PP_0563	0.47	+0.1
655,645	+		PP_0563	0.49	-0.5
655,645	+		PP_0563	0.49	+0.7
655,645	+		PP_0563	0.49	-0.5
655,646	-		PP_0563	0.49	+1.0
655,646	-		PP_0563	0.49	-0.3
655,666	-		PP_0563	0.50	+1.0
655,702	+		PP_0563	0.53	+0.9
655,703	-		PP_0563	0.53	+0.5
655,703	-		PP_0563	0.53	+0.2
655,703	-		PP_0563	0.53	-0.1
655,703	-		PP_0563	0.53	+0.4
655,703	-		PP_0563	0.53	+0.5
655,803	+		PP_0563	0.60	+0.2
655,816	+		PP_0563	0.61	+0.9
655,817	-		PP_0563	0.61	+0.4
655,817	-		PP_0563	0.61	-0.1
655,817	-		PP_0563	0.61	+0.3
655,817	-		PP_0563	0.61	+0.2
656,110	+		PP_0563	0.83	+0.5
656,227	+				+0.8
656,227	+				+0.8
656,227	+				-1.1
656,228	-				+0.5
656,228	-				-0.1
656,352	-				+0.3
656,355	+				-0.7
656,355	+				-0.7
656,355	+				+1.4
656,356	-				-0.3
656,356	-				-0.2
656,356	-				-0.7
656,357	+				+0.7
656,358	-				+0.4
656,358	-				-0.9
656,358	-				-1.9
656,477	+				+0.3
656,484	-				-1.4
656,500	+				-0.4
656,501	-				-2.4
656,501	-				+0.1
656,502	+				-1.3
656,502	+				-0.1
656,502	+				+0.3
656,503	-				-1.2
656,668	+				-0.3
656,668	+				-1.8
656,669	-				-1.7
656,808	+		PP_0564	0.22	-0.8
656,808	+		PP_0564	0.22	-1.6
656,809	-		PP_0564	0.22	-0.4
656,833	+		PP_0564	0.24	-0.4
656,833	+		PP_0564	0.24	-0.1
656,834	-		PP_0564	0.24	-1.1
656,835	+		PP_0564	0.24	-0.4
656,835	+		PP_0564	0.24	-0.9
656,835	+		PP_0564	0.24	-2.6
656,835	+		PP_0564	0.24	-2.2
656,835	+		PP_0564	0.24	-1.7
656,836	-		PP_0564	0.25	-0.8
656,836	-		PP_0564	0.25	+0.5
656,836	-		PP_0564	0.25	-1.5
656,836	-		PP_0564	0.25	-0.5
656,836	-		PP_0564	0.25	+0.0
656,953	+		PP_0564	0.35	-0.5
656,954	-		PP_0564	0.35	-3.1
656,997	+		PP_0564	0.39	-1.0
657,177	+		PP_0564	0.56	+0.1
657,178	-		PP_0564	0.56	+0.1
657,184	+		PP_0564	0.56	-1.9
657,185	-		PP_0564	0.57	-2.0
657,187	-		PP_0564	0.57	-3.2
657,386	-		PP_0564	0.75	-3.7
657,599	-				+0.5
657,665	+				+3.0
657,665	+				-0.7
657,743	-		PP_0565	0.16	-0.2
657,838	+		PP_0565	0.33	+0.0
657,848	+		PP_0565	0.35	-0.6
657,876	+		PP_0565	0.40	-0.1
658,000	-		PP_0565	0.64	-1.0
658,039	-		PP_0565	0.71	-0.1
658,086	-		PP_0565	0.80	+0.1
658,143	+				-0.0
658,144	-				+0.4
658,144	-				+0.7
658,176	+				+0.2
658,176	+				+0.3
658,176	+				-0.8
658,192	-				-0.1
658,192	-				+0.2
658,279	+				-1.6
658,296	+				-1.4
658,296	+				+0.1
658,297	-				-0.2
658,302	+				-0.9
658,479	-		PP_0566	0.12	-0.3