Strain Fitness in Pseudomonas putida KT2440 around PP_0489

Experiment: P. putida PUT10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0487 and PP_0488 are separated by 21 nucleotidesPP_0488 and PP_0489 are separated by 147 nucleotidesPP_0489 and PP_0490 overlap by 1 nucleotidesPP_0490 and PP_0491 overlap by 4 nucleotides PP_0487: PP_0487 - conserved membrane protein of unknown function, at 573,236 to 574,033 _0487 PP_0488: PP_0488 - putative NADP-dependent dehydrogenase HI_1430, at 574,055 to 574,816 _0488 PP_0489: PP_0489 - formate dehydrogenase-O major subunit, at 574,964 to 578,032 _0489 PP_0490: PP_0490 - formate dehydrogenase-O, beta subunit, at 578,032 to 578,982 _0490 PP_0491: PP_0491 - formate dehydrogenase-O, gamma subunit, at 578,979 to 579,635 _0491 Position (kb) 574 575 576 577 578 579Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 574.043 kb on - strandat 574.043 kb on - strandat 574.043 kb on - strandat 574.071 kb on + strandat 574.195 kb on - strand, within PP_0488at 574.472 kb on + strand, within PP_0488at 574.472 kb on + strand, within PP_0488at 574.472 kb on + strand, within PP_0488at 574.472 kb on + strand, within PP_0488at 574.472 kb on + strand, within PP_0488at 574.472 kb on + strand, within PP_0488at 574.473 kb on - strand, within PP_0488at 574.473 kb on - strand, within PP_0488at 574.496 kb on + strand, within PP_0488at 574.496 kb on + strand, within PP_0488at 574.497 kb on - strand, within PP_0488at 574.658 kb on + strand, within PP_0488at 574.659 kb on - strand, within PP_0488at 574.668 kb on + strand, within PP_0488at 574.668 kb on + strand, within PP_0488at 574.668 kb on + strand, within PP_0488at 574.668 kb on + strand, within PP_0488at 574.668 kb on + strand, within PP_0488at 574.669 kb on - strand, within PP_0488at 574.669 kb on - strand, within PP_0488at 574.669 kb on - strand, within PP_0488at 574.669 kb on - strand, within PP_0488at 574.738 kb on + strand, within PP_0488at 574.739 kb on - strand, within PP_0488at 574.744 kb on + strandat 574.744 kb on + strandat 574.744 kb on + strandat 574.745 kb on - strandat 574.745 kb on - strandat 574.745 kb on - strandat 574.866 kb on + strandat 575.120 kb on + strandat 575.197 kb on + strandat 575.198 kb on - strandat 575.489 kb on + strand, within PP_0489at 575.490 kb on - strand, within PP_0489at 575.588 kb on + strand, within PP_0489at 575.588 kb on + strand, within PP_0489at 575.588 kb on + strand, within PP_0489at 575.777 kb on + strand, within PP_0489at 575.777 kb on + strand, within PP_0489at 575.777 kb on + strand, within PP_0489at 575.780 kb on + strand, within PP_0489at 575.781 kb on - strand, within PP_0489at 575.781 kb on - strand, within PP_0489at 575.781 kb on - strand, within PP_0489at 575.834 kb on + strand, within PP_0489at 575.834 kb on + strand, within PP_0489at 575.834 kb on + strand, within PP_0489at 575.835 kb on - strand, within PP_0489at 575.867 kb on + strand, within PP_0489at 575.868 kb on - strand, within PP_0489at 575.879 kb on + strand, within PP_0489at 575.879 kb on + strand, within PP_0489at 575.880 kb on - strand, within PP_0489at 575.880 kb on - strand, within PP_0489at 575.880 kb on - strand, within PP_0489at 575.880 kb on - strand, within PP_0489at 575.880 kb on - strand, within PP_0489at 575.912 kb on + strand, within PP_0489at 575.912 kb on + strand, within PP_0489at 575.912 kb on + strand, within PP_0489at 575.912 kb on + strand, within PP_0489at 575.913 kb on - strand, within PP_0489at 575.913 kb on - strand, within PP_0489at 575.913 kb on - strand, within PP_0489at 575.913 kb on - strand, within PP_0489at 575.913 kb on - strand, within PP_0489at 575.963 kb on + strand, within PP_0489at 575.964 kb on - strand, within PP_0489at 575.964 kb on - strand, within PP_0489at 576.009 kb on - strand, within PP_0489at 576.071 kb on + strand, within PP_0489at 576.071 kb on + strand, within PP_0489at 576.072 kb on - strand, within PP_0489at 576.072 kb on - strand, within PP_0489at 576.080 kb on + strand, within PP_0489at 576.081 kb on - strand, within PP_0489at 576.191 kb on + strand, within PP_0489at 576.199 kb on - strand, within PP_0489at 576.232 kb on + strand, within PP_0489at 576.369 kb on - strand, within PP_0489at 576.458 kb on + strand, within PP_0489at 576.459 kb on - strand, within PP_0489at 576.471 kb on - strand, within PP_0489at 576.542 kb on + strand, within PP_0489at 576.543 kb on - strand, within PP_0489at 576.576 kb on - strand, within PP_0489at 576.576 kb on - strand, within PP_0489at 576.626 kb on + strand, within PP_0489at 576.626 kb on + strand, within PP_0489at 576.627 kb on - strand, within PP_0489at 576.627 kb on - strand, within PP_0489at 576.627 kb on - strand, within PP_0489at 576.627 kb on - strand, within PP_0489at 576.627 kb on - strand, within PP_0489at 576.627 kb on - strand, within PP_0489at 576.627 kb on - strand, within PP_0489at 576.627 kb on - strand, within PP_0489at 576.627 kb on - strand, within PP_0489at 576.628 kb on + strand, within PP_0489at 576.628 kb on + strand, within PP_0489at 576.628 kb on + strand, within PP_0489at 576.628 kb on + strand, within PP_0489at 576.628 kb on + strand, within PP_0489at 576.628 kb on + strand, within PP_0489at 576.628 kb on + strand, within PP_0489at 576.628 kb on + strand, within PP_0489at 576.628 kb on + strand, within PP_0489at 576.628 kb on + strand, within PP_0489at 576.628 kb on + strandat 576.629 kb on - strand, within PP_0489at 576.629 kb on - strand, within PP_0489at 576.629 kb on - strand, within PP_0489at 576.629 kb on - strand, within PP_0489at 576.629 kb on - strand, within PP_0489at 576.629 kb on - strand, within PP_0489at 576.629 kb on - strand, within PP_0489at 576.801 kb on - strand, within PP_0489at 576.962 kb on + strand, within PP_0489at 577.003 kb on + strand, within PP_0489at 577.004 kb on - strand, within PP_0489at 577.004 kb on - strand, within PP_0489at 577.004 kb on - strand, within PP_0489at 577.004 kb on - strand, within PP_0489at 577.016 kb on + strand, within PP_0489at 577.017 kb on - strand, within PP_0489at 577.193 kb on - strand, within PP_0489at 577.304 kb on + strand, within PP_0489at 577.304 kb on + strand, within PP_0489at 577.305 kb on - strand, within PP_0489at 577.305 kb on - strand, within PP_0489at 577.365 kb on + strand, within PP_0489at 577.365 kb on + strand, within PP_0489at 577.365 kb on + strand, within PP_0489at 577.365 kb on + strand, within PP_0489at 577.523 kb on + strand, within PP_0489at 577.523 kb on + strand, within PP_0489at 577.523 kb on + strand, within PP_0489at 577.523 kb on + strand, within PP_0489at 577.524 kb on - strand, within PP_0489at 577.652 kb on + strand, within PP_0489at 577.653 kb on - strand, within PP_0489at 577.653 kb on - strand, within PP_0489at 577.667 kb on + strand, within PP_0489at 577.749 kb on + strandat 577.823 kb on - strandat 577.940 kb on + strandat 577.941 kb on - strandat 577.941 kb on - strandat 577.951 kb on + strandat 577.951 kb on + strandat 577.951 kb on + strandat 577.952 kb on - strandat 578.124 kb on + strandat 578.212 kb on + strand, within PP_0490at 578.212 kb on + strand, within PP_0490at 578.213 kb on - strand, within PP_0490at 578.213 kb on - strand, within PP_0490at 578.466 kb on + strand, within PP_0490at 578.466 kb on + strand, within PP_0490at 578.491 kb on + strand, within PP_0490at 578.491 kb on + strandat 578.492 kb on - strand, within PP_0490at 578.492 kb on - strand, within PP_0490at 578.642 kb on - strand, within PP_0490at 578.696 kb on - strand, within PP_0490at 578.696 kb on - strand, within PP_0490at 578.728 kb on + strand, within PP_0490at 578.728 kb on + strand, within PP_0490at 578.845 kb on + strand, within PP_0490at 578.845 kb on + strand, within PP_0490at 578.846 kb on - strand, within PP_0490at 578.846 kb on - strand, within PP_0490at 578.938 kb on + strandat 578.938 kb on + strandat 578.938 kb on + strandat 578.938 kb on + strandat 578.938 kb on + strandat 578.938 kb on + strandat 578.939 kb on - strandat 578.939 kb on - strandat 579.006 kb on + strandat 579.007 kb on - strandat 579.023 kb on + strandat 579.023 kb on + strandat 579.024 kb on - strandat 579.024 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1
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574,043 - +0.3
574,043 - +0.2
574,043 - -0.2
574,071 + +0.1
574,195 - PP_0488 0.18 +0.3
574,472 + PP_0488 0.55 -0.3
574,472 + PP_0488 0.55 +0.0
574,472 + PP_0488 0.55 +0.8
574,472 + PP_0488 0.55 +0.9
574,472 + PP_0488 0.55 +0.3
574,472 + PP_0488 0.55 +0.7
574,473 - PP_0488 0.55 -0.6
574,473 - PP_0488 0.55 -0.5
574,496 + PP_0488 0.58 +1.4
574,496 + PP_0488 0.58 +1.5
574,497 - PP_0488 0.58 +1.0
574,658 + PP_0488 0.79 -0.5
574,659 - PP_0488 0.79 +1.2
574,668 + PP_0488 0.80 +0.7
574,668 + PP_0488 0.80 +0.0
574,668 + PP_0488 0.80 +0.4
574,668 + PP_0488 0.80 -0.9
574,668 + PP_0488 0.80 -0.0
574,669 - PP_0488 0.81 -0.1
574,669 - PP_0488 0.81 +0.3
574,669 - PP_0488 0.81 -1.2
574,669 - PP_0488 0.81 +0.4
574,738 + PP_0488 0.90 -0.1
574,739 - PP_0488 0.90 +0.9
574,744 + +0.5
574,744 + +0.6
574,744 + +0.4
574,745 - +0.2
574,745 - +1.0
574,745 - +0.4
574,866 + -0.3
575,120 + -1.3
575,197 + +0.2
575,198 - +0.1
575,489 + PP_0489 0.17 +0.5
575,490 - PP_0489 0.17 +0.1
575,588 + PP_0489 0.20 +1.3
575,588 + PP_0489 0.20 -0.4
575,588 + PP_0489 0.20 +0.7
575,777 + PP_0489 0.26 +1.6
575,777 + PP_0489 0.26 +1.1
575,777 + PP_0489 0.26 -0.1
575,780 + PP_0489 0.27 +1.5
575,781 - PP_0489 0.27 -0.7
575,781 - PP_0489 0.27 +0.7
575,781 - PP_0489 0.27 -0.2
575,834 + PP_0489 0.28 +1.1
575,834 + PP_0489 0.28 -0.1
575,834 + PP_0489 0.28 +0.4
575,835 - PP_0489 0.28 +0.0
575,867 + PP_0489 0.29 +0.2
575,868 - PP_0489 0.29 -0.3
575,879 + PP_0489 0.30 -0.3
575,879 + PP_0489 0.30 +0.8
575,880 - PP_0489 0.30 +0.7
575,880 - PP_0489 0.30 -1.1
575,880 - PP_0489 0.30 +0.3
575,880 - PP_0489 0.30 +1.0
575,880 - PP_0489 0.30 -0.4
575,912 + PP_0489 0.31 +1.1
575,912 + PP_0489 0.31 +0.3
575,912 + PP_0489 0.31 -0.0
575,912 + PP_0489 0.31 +0.2
575,913 - PP_0489 0.31 +0.6
575,913 - PP_0489 0.31 +0.8
575,913 - PP_0489 0.31 +0.5
575,913 - PP_0489 0.31 +0.7
575,913 - PP_0489 0.31 +1.1
575,963 + PP_0489 0.33 -0.1
575,964 - PP_0489 0.33 -1.3
575,964 - PP_0489 0.33 +0.9
576,009 - PP_0489 0.34 +1.3
576,071 + PP_0489 0.36 +1.1
576,071 + PP_0489 0.36 -0.0
576,072 - PP_0489 0.36 +0.4
576,072 - PP_0489 0.36 -1.1
576,080 + PP_0489 0.36 -2.3
576,081 - PP_0489 0.36 -1.9
576,191 + PP_0489 0.40 -2.6
576,199 - PP_0489 0.40 +0.6
576,232 + PP_0489 0.41 +0.0
576,369 - PP_0489 0.46 +0.5
576,458 + PP_0489 0.49 -0.1
576,459 - PP_0489 0.49 -0.8
576,471 - PP_0489 0.49 +0.4
576,542 + PP_0489 0.51 +0.4
576,543 - PP_0489 0.51 +1.3
576,576 - PP_0489 0.53 +0.6
576,576 - PP_0489 0.53 +0.7
576,626 + PP_0489 0.54 -1.1
576,626 + PP_0489 0.54 +0.9
576,627 - PP_0489 0.54 -0.1
576,627 - PP_0489 0.54 +0.3
576,627 - PP_0489 0.54 +0.7
576,627 - PP_0489 0.54 +1.1
576,627 - PP_0489 0.54 -0.4
576,627 - PP_0489 0.54 -0.2
576,627 - PP_0489 0.54 +1.6
576,627 - PP_0489 0.54 +0.1
576,627 - PP_0489 0.54 +0.3
576,628 + PP_0489 0.54 -0.4
576,628 + PP_0489 0.54 +1.2
576,628 + PP_0489 0.54 +0.8
576,628 + PP_0489 0.54 +0.2
576,628 + PP_0489 0.54 +0.8
576,628 + PP_0489 0.54 -0.9
576,628 + PP_0489 0.54 +0.1
576,628 + PP_0489 0.54 +0.6
576,628 + PP_0489 0.54 -0.2
576,628 + PP_0489 0.54 +0.5
576,628 + +0.7
576,629 - PP_0489 0.54 +0.6
576,629 - PP_0489 0.54 +1.0
576,629 - PP_0489 0.54 +0.1
576,629 - PP_0489 0.54 +0.7
576,629 - PP_0489 0.54 -2.3
576,629 - PP_0489 0.54 +0.7
576,629 - PP_0489 0.54 -1.9
576,801 - PP_0489 0.60 -0.1
576,962 + PP_0489 0.65 +1.1
577,003 + PP_0489 0.66 +0.1
577,004 - PP_0489 0.66 +1.1
577,004 - PP_0489 0.66 +1.0
577,004 - PP_0489 0.66 +0.5
577,004 - PP_0489 0.66 -0.3
577,016 + PP_0489 0.67 +0.6
577,017 - PP_0489 0.67 +0.1
577,193 - PP_0489 0.73 +1.0
577,304 + PP_0489 0.76 +1.9
577,304 + PP_0489 0.76 +0.4
577,305 - PP_0489 0.76 -0.7
577,305 - PP_0489 0.76 +0.3
577,365 + PP_0489 0.78 -0.3
577,365 + PP_0489 0.78 -0.4
577,365 + PP_0489 0.78 +1.0
577,365 + PP_0489 0.78 -0.6
577,523 + PP_0489 0.83 +1.3
577,523 + PP_0489 0.83 -2.8
577,523 + PP_0489 0.83 +0.3
577,523 + PP_0489 0.83 +0.5
577,524 - PP_0489 0.83 +0.6
577,652 + PP_0489 0.88 -0.6
577,653 - PP_0489 0.88 -0.1
577,653 - PP_0489 0.88 +0.4
577,667 + PP_0489 0.88 -0.3
577,749 + +1.6
577,823 - +1.0
577,940 + -0.4
577,941 - +0.7
577,941 - +2.3
577,951 + -0.3
577,951 + +0.7
577,951 + +1.5
577,952 - +0.4
578,124 + +0.2
578,212 + PP_0490 0.19 -0.6
578,212 + PP_0490 0.19 -0.0
578,213 - PP_0490 0.19 -1.0
578,213 - PP_0490 0.19 +0.9
578,466 + PP_0490 0.46 -0.4
578,466 + PP_0490 0.46 +1.0
578,491 + PP_0490 0.48 +0.2
578,491 + +1.1
578,492 - PP_0490 0.48 +0.0
578,492 - PP_0490 0.48 +0.1
578,642 - PP_0490 0.64 -1.0
578,696 - PP_0490 0.70 +0.4
578,696 - PP_0490 0.70 +1.4
578,728 + PP_0490 0.73 -0.3
578,728 + PP_0490 0.73 +0.6
578,845 + PP_0490 0.85 +0.6
578,845 + PP_0490 0.85 -0.3
578,846 - PP_0490 0.86 +0.8
578,846 - PP_0490 0.86 +2.1
578,938 + -0.4
578,938 + +0.3
578,938 + -0.1
578,938 + -0.8
578,938 + -0.7
578,938 + +1.0
578,939 - +0.8
578,939 - -0.2
579,006 + +1.2
579,007 - -0.4
579,023 + -0.2
579,023 + +0.2
579,024 - +0.2
579,024 - +1.0

Or see this region's nucleotide sequence