Experiment: P. putida PUT10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0245 and PP_0246 overlap by 44 nucleotides PP_0246 and PP_0247 are separated by 13 nucleotides PP_0247 and PP_0248 are separated by 97 nucleotides
PP_0245: PP_0245 - putative transcriptional accessory protein, at 298,540 to 301,125
_0245
PP_0246: PP_0246 - two-component system DNA-binding response transcriptional dual regulator, at 301,082 to 301,822
_0246
PP_0247: PP_0247 - Osmolarity sensor protein EnvZ, at 301,836 to 303,149
_0247
PP_0248: PP_0248 - Probable alpha-L-glutamate ligase, at 303,247 to 304,152
_0248
PP_0249: PP_0249 - conserved protein of unknown function, at 304,149 to 304,769
_0249
Position (kb) 301
302
303
304 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 300.843 kb on + strand, within PP_0245 at 300.866 kb on + strand, within PP_0245 at 300.867 kb on - strand at 300.867 kb on - strand at 300.888 kb on + strand at 300.889 kb on - strand at 300.943 kb on + strand at 300.943 kb on + strand at 300.943 kb on + strand at 300.943 kb on + strand at 300.944 kb on - strand at 300.944 kb on - strand at 300.944 kb on - strand at 300.945 kb on + strand at 300.946 kb on - strand at 300.946 kb on - strand at 300.946 kb on - strand at 301.078 kb on - strand at 301.078 kb on - strand at 301.185 kb on - strand, within PP_0246 at 301.403 kb on + strand, within PP_0246 at 301.527 kb on - strand, within PP_0246 at 301.761 kb on - strand at 301.761 kb on - strand at 301.787 kb on + strand at 301.787 kb on + strand at 301.788 kb on - strand at 301.932 kb on + strand at 301.933 kb on - strand at 301.972 kb on - strand, within PP_0247 at 301.972 kb on - strand, within PP_0247 at 302.004 kb on + strand, within PP_0247 at 302.005 kb on - strand, within PP_0247 at 302.005 kb on - strand, within PP_0247 at 302.058 kb on - strand, within PP_0247 at 302.058 kb on - strand, within PP_0247 at 302.106 kb on + strand, within PP_0247 at 302.106 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.119 kb on - strand, within PP_0247 at 302.119 kb on - strand, within PP_0247 at 302.119 kb on - strand, within PP_0247 at 302.241 kb on + strand, within PP_0247 at 302.448 kb on + strand, within PP_0247 at 302.448 kb on + strand, within PP_0247 at 302.448 kb on + strand, within PP_0247 at 302.449 kb on - strand, within PP_0247 at 302.449 kb on - strand, within PP_0247 at 302.731 kb on - strand, within PP_0247 at 302.731 kb on - strand, within PP_0247 at 302.874 kb on + strand, within PP_0247 at 302.874 kb on + strand, within PP_0247 at 302.874 kb on + strand, within PP_0247 at 302.874 kb on + strand, within PP_0247 at 302.874 kb on + strand, within PP_0247 at 302.874 kb on + strand, within PP_0247 at 302.875 kb on - strand, within PP_0247 at 302.875 kb on - strand, within PP_0247 at 302.875 kb on - strand, within PP_0247 at 302.875 kb on - strand, within PP_0247 at 302.875 kb on - strand, within PP_0247 at 302.901 kb on + strand, within PP_0247 at 302.902 kb on - strand, within PP_0247 at 302.902 kb on - strand, within PP_0247 at 303.137 kb on + strand at 303.185 kb on - strand at 303.200 kb on + strand at 303.562 kb on + strand, within PP_0248 at 303.562 kb on + strand, within PP_0248 at 303.617 kb on + strand, within PP_0248 at 303.617 kb on + strand, within PP_0248 at 303.618 kb on - strand, within PP_0248 at 303.818 kb on - strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.899 kb on - strand, within PP_0248 at 303.899 kb on - strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.958 kb on + strand, within PP_0248 at 303.958 kb on + strand, within PP_0248 at 303.958 kb on + strand, within PP_0248 at 303.958 kb on + strand, within PP_0248 at 303.959 kb on - strand, within PP_0248 at 303.959 kb on - strand, within PP_0248 at 303.959 kb on - strand, within PP_0248 at 304.040 kb on + strand, within PP_0248 at 304.041 kb on - strand, within PP_0248 at 304.116 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1 remove 300,843 + PP_0245 0.89 +0.2 300,866 + PP_0245 0.90 +0.8 300,867 - -2.8 300,867 - -3.7 300,888 + +0.9 300,889 - -0.1 300,943 + +0.8 300,943 + +1.0 300,943 + -3.0 300,943 + +0.6 300,944 - -1.7 300,944 - +0.1 300,944 - -1.9 300,945 + +1.1 300,946 - -0.7 300,946 - -1.9 300,946 - -0.8 301,078 - +1.8 301,078 - +2.7 301,185 - PP_0246 0.14 +1.3 301,403 + PP_0246 0.43 +1.4 301,527 - PP_0246 0.60 +1.3 301,761 - +1.6 301,761 - +2.2 301,787 + +1.0 301,787 + +1.8 301,788 - +1.3 301,932 + +1.1 301,933 - +2.0 301,972 - PP_0247 0.10 +1.3 301,972 - PP_0247 0.10 +1.6 302,004 + PP_0247 0.13 +1.2 302,005 - PP_0247 0.13 +0.6 302,005 - PP_0247 0.13 +2.6 302,058 - PP_0247 0.17 +1.6 302,058 - PP_0247 0.17 +1.8 302,106 + PP_0247 0.21 +0.7 302,106 + PP_0247 0.21 +0.6 302,118 + PP_0247 0.21 +1.1 302,118 + PP_0247 0.21 +1.0 302,118 + PP_0247 0.21 +0.9 302,118 + PP_0247 0.21 +1.2 302,119 - PP_0247 0.22 +1.8 302,119 - PP_0247 0.22 +1.5 302,119 - PP_0247 0.22 +0.7 302,241 + PP_0247 0.31 +0.4 302,448 + PP_0247 0.47 +1.0 302,448 + PP_0247 0.47 -0.5 302,448 + PP_0247 0.47 +1.3 302,449 - PP_0247 0.47 +1.3 302,449 - PP_0247 0.47 +0.6 302,731 - PP_0247 0.68 +1.8 302,731 - PP_0247 0.68 +1.6 302,874 + PP_0247 0.79 +0.2 302,874 + PP_0247 0.79 +0.8 302,874 + PP_0247 0.79 +1.0 302,874 + PP_0247 0.79 +1.0 302,874 + PP_0247 0.79 +0.8 302,874 + PP_0247 0.79 +1.3 302,875 - PP_0247 0.79 +0.3 302,875 - PP_0247 0.79 +2.8 302,875 - PP_0247 0.79 +1.3 302,875 - PP_0247 0.79 +0.8 302,875 - PP_0247 0.79 +1.1 302,901 + PP_0247 0.81 -0.6 302,902 - PP_0247 0.81 -1.0 302,902 - PP_0247 0.81 +1.4 303,137 + -2.6 303,185 - -1.1 303,200 + -0.9 303,562 + PP_0248 0.35 +0.2 303,562 + PP_0248 0.35 -0.0 303,617 + PP_0248 0.41 -0.9 303,617 + PP_0248 0.41 -0.7 303,618 - PP_0248 0.41 -0.3 303,818 - PP_0248 0.63 -1.5 303,898 + PP_0248 0.72 -0.0 303,898 + PP_0248 0.72 -0.9 303,898 + PP_0248 0.72 -0.3 303,898 + PP_0248 0.72 -0.1 303,898 + PP_0248 0.72 -1.3 303,898 + PP_0248 0.72 +0.1 303,898 + PP_0248 0.72 -2.9 303,899 - PP_0248 0.72 -0.3 303,899 - PP_0248 0.72 +0.1 303,938 + PP_0248 0.76 +0.9 303,938 + PP_0248 0.76 -0.9 303,938 + PP_0248 0.76 -0.6 303,938 + PP_0248 0.76 -0.2 303,938 + PP_0248 0.76 -1.4 303,938 + PP_0248 0.76 -1.2 303,938 + PP_0248 0.76 -0.7 303,939 - PP_0248 0.76 +0.6 303,939 - PP_0248 0.76 -0.9 303,939 - PP_0248 0.76 -1.7 303,939 - PP_0248 0.76 -0.2 303,939 - PP_0248 0.76 +0.2 303,939 - PP_0248 0.76 +0.3 303,939 - PP_0248 0.76 -0.4 303,939 - PP_0248 0.76 -0.3 303,958 + PP_0248 0.78 -0.5 303,958 + PP_0248 0.78 -2.0 303,958 + PP_0248 0.78 -0.7 303,958 + PP_0248 0.78 -0.3 303,959 - PP_0248 0.79 -0.2 303,959 - PP_0248 0.79 +0.2 303,959 - PP_0248 0.79 -0.5 304,040 + PP_0248 0.88 -1.4 304,041 - PP_0248 0.88 +0.2 304,116 - -0.3
Or see this region's nucleotide sequence