Experiment: P. putida PUT10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0186 and PP_0187 overlap by 4 nucleotides PP_0187 and PP_0188 are separated by 18 nucleotides
PP_0186: PP_0186 - Porphobilinogen deaminase, at 237,982 to 238,923
_0186
PP_0187: PP_0187 - Uroporphyrinogen-III synthase, at 238,920 to 239,687
_0187
PP_0188: PP_0188 - putative Uroporphyrin-III C-methyltransferase, at 239,706 to 240,833
_0188
Position (kb) 238
239
240 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 239.685 kb on + strand at 239.685 kb on + strand at 239.685 kb on + strand at 239.685 kb on + strand at 239.685 kb on + strand at 239.686 kb on - strand at 239.693 kb on + strand at 239.694 kb on - strand at 239.694 kb on - strand at 239.730 kb on + strand at 239.730 kb on + strand at 239.731 kb on - strand at 239.731 kb on - strand at 239.731 kb on - strand at 239.762 kb on + strand at 239.763 kb on - strand at 239.763 kb on - strand at 239.763 kb on - strand at 239.872 kb on + strand, within PP_0188 at 239.872 kb on + strand, within PP_0188 at 239.873 kb on - strand, within PP_0188 at 240.028 kb on + strand, within PP_0188 at 240.161 kb on + strand, within PP_0188 at 240.323 kb on + strand, within PP_0188 at 240.324 kb on - strand, within PP_0188 at 240.365 kb on - strand, within PP_0188 at 240.402 kb on - strand, within PP_0188 at 240.475 kb on + strand, within PP_0188 at 240.483 kb on + strand, within PP_0188 at 240.484 kb on - strand, within PP_0188 at 240.575 kb on + strand, within PP_0188 at 240.576 kb on - strand, within PP_0188 at 240.652 kb on + strand, within PP_0188 at 240.653 kb on - strand, within PP_0188
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1 remove 239,685 + -0.4 239,685 + -1.1 239,685 + -1.2 239,685 + -2.4 239,685 + -0.9 239,686 - -0.5 239,693 + +0.7 239,694 - -1.1 239,694 - -1.2 239,730 + -1.4 239,730 + +0.5 239,731 - +0.7 239,731 - +0.4 239,731 - +2.8 239,762 + +0.5 239,763 - +0.8 239,763 - +0.0 239,763 - -0.9 239,872 + PP_0188 0.15 -0.5 239,872 + PP_0188 0.15 +0.3 239,873 - PP_0188 0.15 -0.7 240,028 + PP_0188 0.29 +0.2 240,161 + PP_0188 0.40 +0.2 240,323 + PP_0188 0.55 -0.9 240,324 - PP_0188 0.55 +0.4 240,365 - PP_0188 0.58 -0.6 240,402 - PP_0188 0.62 -0.8 240,475 + PP_0188 0.68 -0.5 240,483 + PP_0188 0.69 -0.3 240,484 - PP_0188 0.69 -0.3 240,575 + PP_0188 0.77 +0.5 240,576 - PP_0188 0.77 +0.5 240,652 + PP_0188 0.84 -1.9 240,653 - PP_0188 0.84 +0.3
Or see this region's nucleotide sequence