Strain Fitness in Escherichia coli BW25113 around b4672

Experiment: carbon source D-Mannose 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgmr and ymiB are separated by 53 nucleotidesymiB and rnb are separated by 77 nucleotides b1285: gmr - modulator of Rnase II stability (NCBI), at 1,342,781 to 1,344,766 gmr b4672: ymiB - expressed protein (RefSeq), at 1,344,820 to 1,344,924 ymiB b1286: rnb - exoribonuclease II (NCBI), at 1,345,002 to 1,346,936 rnb Position (kb) 1344 1345Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1343.840 kb on + strand, within gmrat 1343.849 kb on + strand, within gmrat 1343.988 kb on + strand, within gmrat 1343.988 kb on + strand, within gmrat 1344.018 kb on + strand, within gmrat 1344.084 kb on - strand, within gmrat 1344.111 kb on + strand, within gmrat 1344.215 kb on + strand, within gmrat 1344.256 kb on - strand, within gmrat 1344.290 kb on - strand, within gmrat 1344.481 kb on + strand, within gmrat 1345.121 kb on + strandat 1345.306 kb on - strand, within rnbat 1345.321 kb on - strand, within rnbat 1345.321 kb on - strand, within rnbat 1345.492 kb on - strand, within rnbat 1345.550 kb on - strand, within rnbat 1345.727 kb on + strand, within rnbat 1345.736 kb on - strand, within rnb

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Mannose 0.5mM
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1,343,840 + gmr b1285 0.53 -3.6
1,343,849 + gmr b1285 0.54 -2.8
1,343,988 + gmr b1285 0.61 +1.1
1,343,988 + gmr b1285 0.61 -1.3
1,344,018 + gmr b1285 0.62 -3.6
1,344,084 - gmr b1285 0.66 -4.3
1,344,111 + gmr b1285 0.67 -1.8
1,344,215 + gmr b1285 0.72 -1.8
1,344,256 - gmr b1285 0.74 -4.2
1,344,290 - gmr b1285 0.76 -0.9
1,344,481 + gmr b1285 0.86 +0.5
1,345,121 + +0.7
1,345,306 - rnb b1286 0.16 -2.0
1,345,321 - rnb b1286 0.16 -0.9
1,345,321 - rnb b1286 0.16 +1.8
1,345,492 - rnb b1286 0.25 +0.1
1,345,550 - rnb b1286 0.28 -0.8
1,345,727 + rnb b1286 0.37 -2.5
1,345,736 - rnb b1286 0.38 -1.7

Or see this region's nucleotide sequence