Strain Fitness in Pseudomonas putida KT2440 around PP_1335

Experiment: P. putida PUT10 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1334 and PP_1335 are separated by 0 nucleotidesPP_1335 and PP_1336 overlap by 4 nucleotides PP_1334: PP_1334 - Phospho-N-acetylmuramoyl-pentapeptide- transferase, at 1,519,661 to 1,520,743 _1334 PP_1335: PP_1335 - UDP-N-acetylmuramoylalanine--D-glutamate ligase, at 1,520,744 to 1,522,096 _1335 PP_1336: PP_1336 - lipid II flippase, at 1,522,093 to 1,523,307 _1336 Position (kb) 1520 1521 1522 1523Strain fitness (log2 ratio) -1 0 1at 1520.741 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 10
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1,520,741 + +0.8

Or see this region's nucleotide sequence