Strain Fitness in Pseudomonas putida KT2440 around PP_0010

Experiment: P. putida PUT10 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0008 and PP_0009 are separated by 13 nucleotidesPP_0009 and PP_0010 are separated by 595 nucleotidesPP_0010 and PP_0011 are separated by 40 nucleotides PP_0008: PP_0008 - ribonuclease P protein component, at 8,394 to 8,798 _0008 PP_0009: PP_0009 - 50S ribosomal protein L34, at 8,812 to 8,946 _0009 PP_0010: PP_0010 - chromosomal replication initiator protein, at 9,542 to 11,062 _0010 PP_0011: PP_0011 - DNA polymerase III subunit beta, at 11,103 to 12,206 _0011 Position (kb) 9 10 11 12Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 9.056 kb on - strandat 9.058 kb on - strandat 9.058 kb on - strandat 9.058 kb on - strandat 9.058 kb on - strandat 9.152 kb on + strandat 9.154 kb on + strandat 9.154 kb on + strandat 9.155 kb on - strandat 9.177 kb on - strandat 9.186 kb on - strandat 9.238 kb on + strandat 9.238 kb on + strandat 9.249 kb on - strandat 9.395 kb on - strandat 9.451 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 10
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9,056 - -0.7
9,058 - -2.1
9,058 - -0.4
9,058 - -0.7
9,058 - -1.5
9,152 + -1.7
9,154 + -0.1
9,154 + +0.5
9,155 - -2.0
9,177 - -3.1
9,186 - -0.7
9,238 + -3.4
9,238 + -1.5
9,249 - -2.2
9,395 - -3.8
9,451 + +0.7

Or see this region's nucleotide sequence