Experiment: P. putida South MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5109 and PP_5110 overlap by 4 nucleotides PP_5110 and PP_5111 overlap by 4 nucleotides PP_5111 and PP_5112 are separated by 231 nucleotides
PP_5109: PP_5109 - membrane component of the ABC transporter FtsEX involved in cellular division, at 5,828,963 to 5,829,988
_5109
PP_5110: PP_5110 - cytokinetic ring ABC transporter-like subunit - ATP-binding subunit, at 5,829,985 to 5,830,662
_5110
PP_5111: PP_5111 - Signal Recognition Particle protein translocation receptor GTPase, at 5,830,659 to 5,832,143
_5111
PP_5112: PP_5112 - putative processin peptidase, at 5,832,375 to 5,833,730
_5112
Position (kb) 5830
5831
5832
5833 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5829.675 kb on + strand, within PP_5109 at 5829.973 kb on + strand at 5829.974 kb on - strand at 5829.974 kb on - strand at 5830.088 kb on - strand, within PP_5110 at 5830.283 kb on - strand, within PP_5110 at 5832.217 kb on - strand at 5832.217 kb on - strand at 5832.217 kb on - strand at 5832.256 kb on - strand at 5832.365 kb on + strand at 5832.365 kb on + strand at 5832.374 kb on + strand at 5832.375 kb on - strand at 5832.375 kb on - strand at 5832.375 kb on - strand at 5832.385 kb on + strand at 5832.546 kb on + strand, within PP_5112 at 5832.546 kb on + strand, within PP_5112 at 5832.547 kb on - strand, within PP_5112 at 5832.564 kb on + strand, within PP_5112 at 5832.565 kb on - strand, within PP_5112 at 5832.705 kb on + strand, within PP_5112 at 5832.705 kb on + strand, within PP_5112 at 5832.705 kb on + strand, within PP_5112 at 5832.706 kb on - strand, within PP_5112 at 5832.714 kb on + strand, within PP_5112 at 5832.714 kb on + strand, within PP_5112 at 5832.717 kb on + strand, within PP_5112 at 5832.717 kb on + strand, within PP_5112 at 5832.717 kb on + strand, within PP_5112 at 5832.718 kb on - strand, within PP_5112 at 5832.718 kb on - strand, within PP_5112 at 5832.984 kb on + strand, within PP_5112 at 5832.984 kb on + strand, within PP_5112 at 5832.985 kb on - strand, within PP_5112 at 5832.996 kb on + strand, within PP_5112 at 5833.071 kb on + strand, within PP_5112
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 0.1 remove 5,829,675 + PP_5109 0.69 -0.9 5,829,973 + -1.8 5,829,974 - +0.1 5,829,974 - +1.9 5,830,088 - PP_5110 0.15 +0.2 5,830,283 - PP_5110 0.44 -0.2 5,832,217 - -0.2 5,832,217 - +0.7 5,832,217 - -0.6 5,832,256 - -0.1 5,832,365 + -2.1 5,832,365 + -0.2 5,832,374 + -0.9 5,832,375 - -0.8 5,832,375 - -1.0 5,832,375 - -2.3 5,832,385 + -0.5 5,832,546 + PP_5112 0.13 -0.7 5,832,546 + PP_5112 0.13 -0.6 5,832,547 - PP_5112 0.13 -3.1 5,832,564 + PP_5112 0.14 -1.1 5,832,565 - PP_5112 0.14 +0.4 5,832,705 + PP_5112 0.24 -1.9 5,832,705 + PP_5112 0.24 -0.1 5,832,705 + PP_5112 0.24 +1.3 5,832,706 - PP_5112 0.24 -3.5 5,832,714 + PP_5112 0.25 +1.6 5,832,714 + PP_5112 0.25 +1.5 5,832,717 + PP_5112 0.25 +0.4 5,832,717 + PP_5112 0.25 +1.5 5,832,717 + PP_5112 0.25 -0.3 5,832,718 - PP_5112 0.25 -0.7 5,832,718 - PP_5112 0.25 -2.2 5,832,984 + PP_5112 0.45 -0.1 5,832,984 + PP_5112 0.45 +0.3 5,832,985 - PP_5112 0.45 -0.5 5,832,996 + PP_5112 0.46 -1.3 5,833,071 + PP_5112 0.51 +0.2
Or see this region's nucleotide sequence