Strain Fitness in Pseudomonas putida KT2440 around PP_5101

Experiment: P. putida South MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5099 and PP_5100 overlap by 4 nucleotidesPP_5100 and PP_5101 overlap by 4 nucleotidesPP_5101 and PP_5102 are separated by 9 nucleotidesPP_5102 and PP_5103 are separated by 173 nucleotides PP_5099: PP_5099 - conserved protein of unknown function, at 5,822,041 to 5,822,475 _5099 PP_5100: PP_5100 - dITP/XTP pyrophosphatase, at 5,822,472 to 5,823,068 _5100 PP_5101: PP_5101 - coproporphyrinogen/heterocyclic compound oxidase (aerobic), at 5,823,065 to 5,824,240 _5101 PP_5102: PP_5102 - conserved hypothetical protein, at 5,824,250 to 5,824,576 _5102 PP_5103: PP_5103 - tRNA (guanine-N(7)-)-methyltransferase, at 5,824,750 to 5,825,472 _5103 Position (kb) 5823 5824 5825Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5822.130 kb on - strand, within PP_5099at 5822.152 kb on + strand, within PP_5099at 5822.356 kb on + strand, within PP_5099at 5822.359 kb on + strand, within PP_5099at 5822.359 kb on + strand, within PP_5099at 5822.359 kb on + strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.494 kb on + strandat 5822.728 kb on - strand, within PP_5100at 5822.728 kb on - strand, within PP_5100at 5822.740 kb on - strand, within PP_5100at 5822.989 kb on + strand, within PP_5100at 5822.990 kb on - strand, within PP_5100at 5823.128 kb on + strandat 5823.129 kb on - strandat 5823.129 kb on - strandat 5823.151 kb on - strandat 5823.215 kb on + strand, within PP_5101at 5823.261 kb on + strand, within PP_5101at 5823.261 kb on + strand, within PP_5101at 5823.340 kb on - strand, within PP_5101at 5823.351 kb on + strand, within PP_5101at 5823.351 kb on + strand, within PP_5101at 5823.351 kb on + strand, within PP_5101at 5823.351 kb on + strand, within PP_5101at 5823.352 kb on - strand, within PP_5101at 5823.352 kb on - strand, within PP_5101at 5823.361 kb on + strand, within PP_5101at 5823.361 kb on + strand, within PP_5101at 5823.362 kb on - strand, within PP_5101at 5823.362 kb on - strand, within PP_5101at 5823.680 kb on + strand, within PP_5101at 5823.681 kb on - strand, within PP_5101at 5823.813 kb on + strand, within PP_5101at 5823.860 kb on + strand, within PP_5101at 5823.860 kb on + strand, within PP_5101at 5823.860 kb on + strand, within PP_5101at 5823.968 kb on + strand, within PP_5101at 5823.969 kb on - strand, within PP_5101at 5824.119 kb on + strand, within PP_5101at 5824.120 kb on - strand, within PP_5101at 5824.158 kb on + strandat 5824.158 kb on + strandat 5824.226 kb on + strandat 5824.260 kb on + strandat 5824.329 kb on + strand, within PP_5102at 5824.330 kb on - strand, within PP_5102at 5824.463 kb on + strand, within PP_5102at 5824.463 kb on + strand, within PP_5102at 5824.463 kb on + strand, within PP_5102at 5824.464 kb on - strand, within PP_5102at 5824.464 kb on - strand, within PP_5102at 5824.464 kb on - strand, within PP_5102at 5824.508 kb on + strand, within PP_5102at 5824.508 kb on + strand, within PP_5102at 5824.508 kb on + strand, within PP_5102at 5824.508 kb on + strand, within PP_5102at 5824.509 kb on - strand, within PP_5102at 5824.527 kb on + strand, within PP_5102at 5824.527 kb on + strand, within PP_5102at 5824.543 kb on - strand, within PP_5102at 5824.592 kb on + strandat 5824.592 kb on + strandat 5824.592 kb on + strandat 5824.593 kb on - strandat 5824.670 kb on + strandat 5824.671 kb on - strandat 5824.693 kb on - strandat 5824.741 kb on - strandat 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.851 kb on - strand, within PP_5103at 5824.851 kb on - strand, within PP_5103at 5824.851 kb on - strand, within PP_5103at 5824.911 kb on - strand, within PP_5103at 5824.911 kb on - strand, within PP_5103at 5824.920 kb on - strand, within PP_5103at 5825.074 kb on - strand, within PP_5103at 5825.117 kb on + strand, within PP_5103at 5825.118 kb on - strand, within PP_5103at 5825.118 kb on - strand, within PP_5103

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
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5,822,130 - PP_5099 0.20 -1.8
5,822,152 + PP_5099 0.26 +0.5
5,822,356 + PP_5099 0.72 +0.8
5,822,359 + PP_5099 0.73 -0.3
5,822,359 + PP_5099 0.73 +0.1
5,822,359 + PP_5099 0.73 +0.6
5,822,360 - PP_5099 0.73 -1.6
5,822,360 - PP_5099 0.73 -1.3
5,822,360 - PP_5099 0.73 -0.9
5,822,360 - PP_5099 0.73 -0.8
5,822,360 - PP_5099 0.73 +0.1
5,822,360 - PP_5099 0.73 -0.8
5,822,494 + -0.9
5,822,728 - PP_5100 0.43 -0.5
5,822,728 - PP_5100 0.43 -0.9
5,822,740 - PP_5100 0.45 -0.6
5,822,989 + PP_5100 0.87 +0.1
5,822,990 - PP_5100 0.87 -1.3
5,823,128 + -0.4
5,823,129 - -1.1
5,823,129 - -0.7
5,823,151 - -4.0
5,823,215 + PP_5101 0.13 +0.7
5,823,261 + PP_5101 0.17 -2.2
5,823,261 + PP_5101 0.17 -3.1
5,823,340 - PP_5101 0.23 +0.1
5,823,351 + PP_5101 0.24 -1.9
5,823,351 + PP_5101 0.24 -0.3
5,823,351 + PP_5101 0.24 -1.5
5,823,351 + PP_5101 0.24 -1.5
5,823,352 - PP_5101 0.24 -1.5
5,823,352 - PP_5101 0.24 -4.4
5,823,361 + PP_5101 0.25 -2.3
5,823,361 + PP_5101 0.25 -1.3
5,823,362 - PP_5101 0.25 -2.9
5,823,362 - PP_5101 0.25 -1.0
5,823,680 + PP_5101 0.52 +0.1
5,823,681 - PP_5101 0.52 +0.4
5,823,813 + PP_5101 0.64 -4.0
5,823,860 + PP_5101 0.68 -0.5
5,823,860 + PP_5101 0.68 -4.0
5,823,860 + PP_5101 0.68 -1.5
5,823,968 + PP_5101 0.77 -2.3
5,823,969 - PP_5101 0.77 -2.3
5,824,119 + PP_5101 0.90 +0.1
5,824,120 - PP_5101 0.90 -2.2
5,824,158 + -1.6
5,824,158 + -3.1
5,824,226 + -4.3
5,824,260 + +0.4
5,824,329 + PP_5102 0.24 +1.9
5,824,330 - PP_5102 0.24 +1.4
5,824,463 + PP_5102 0.65 -0.9
5,824,463 + PP_5102 0.65 -3.6
5,824,463 + PP_5102 0.65 -0.2
5,824,464 - PP_5102 0.65 +0.4
5,824,464 - PP_5102 0.65 -1.3
5,824,464 - PP_5102 0.65 -0.4
5,824,508 + PP_5102 0.79 -2.4
5,824,508 + PP_5102 0.79 +1.1
5,824,508 + PP_5102 0.79 +3.1
5,824,508 + PP_5102 0.79 -0.1
5,824,509 - PP_5102 0.79 +1.0
5,824,527 + PP_5102 0.85 +0.3
5,824,527 + PP_5102 0.85 +0.6
5,824,543 - PP_5102 0.90 +1.6
5,824,592 + -0.3
5,824,592 + +0.6
5,824,592 + +0.1
5,824,593 - -1.2
5,824,670 + +1.0
5,824,671 - -0.3
5,824,693 - +0.6
5,824,741 - -2.1
5,824,850 + PP_5103 0.14 +0.1
5,824,850 + PP_5103 0.14 +0.6
5,824,850 + PP_5103 0.14 -0.5
5,824,850 + PP_5103 0.14 +0.2
5,824,850 + PP_5103 0.14 -0.7
5,824,850 + PP_5103 0.14 +1.1
5,824,850 + PP_5103 0.14 +1.3
5,824,850 + PP_5103 0.14 +1.0
5,824,850 + PP_5103 0.14 +1.5
5,824,850 + PP_5103 0.14 -1.1
5,824,851 - PP_5103 0.14 +1.3
5,824,851 - PP_5103 0.14 +0.5
5,824,851 - PP_5103 0.14 +0.3
5,824,911 - PP_5103 0.22 +1.0
5,824,911 - PP_5103 0.22 -0.2
5,824,920 - PP_5103 0.24 -0.7
5,825,074 - PP_5103 0.45 -1.0
5,825,117 + PP_5103 0.51 +0.1
5,825,118 - PP_5103 0.51 +1.8
5,825,118 - PP_5103 0.51 +1.6

Or see this region's nucleotide sequence