Experiment: P. putida South MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4969 and PP_4970 are separated by 74 nucleotides PP_4970 and PP_4971 are separated by 83 nucleotides PP_4971 and PP_4972 are separated by 50 nucleotides PP_4972 and PP_4973 are separated by 28 nucleotides
PP_4969: PP_4969 - conserved exported protein of unknown function, at 5,662,209 to 5,662,601
_4969
PP_4970: PP_4970 - putative Cytochrome c', at 5,662,676 to 5,663,143
_4970
PP_4971: PP_4971 - putative Outer membrane-bound lytic murein transglycolase A, at 5,663,227 to 5,664,405
_4971
PP_4972: PP_4972 - conserved exported protein of unknown function, at 5,664,456 to 5,664,842
_4972
PP_4973: PP_4973 - conserved membrane protein of unknown function, at 5,664,871 to 5,665,704
_4973
Position (kb)
5663
5664
5665 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 5663.128 kb on + strand at 5663.129 kb on - strand at 5663.129 kb on - strand at 5663.151 kb on + strand at 5663.151 kb on + strand at 5663.205 kb on + strand at 5663.205 kb on + strand at 5663.205 kb on + strand at 5663.362 kb on + strand, within PP_4971 at 5663.362 kb on + strand, within PP_4971 at 5663.362 kb on + strand, within PP_4971 at 5663.363 kb on - strand, within PP_4971 at 5663.363 kb on - strand, within PP_4971 at 5663.363 kb on - strand, within PP_4971 at 5663.363 kb on - strand, within PP_4971 at 5663.425 kb on + strand, within PP_4971 at 5663.426 kb on - strand, within PP_4971 at 5663.426 kb on - strand, within PP_4971 at 5663.426 kb on - strand, within PP_4971 at 5663.426 kb on - strand, within PP_4971 at 5663.426 kb on - strand, within PP_4971 at 5663.555 kb on - strand, within PP_4971 at 5663.555 kb on - strand, within PP_4971 at 5663.555 kb on - strand, within PP_4971 at 5663.555 kb on - strand, within PP_4971 at 5663.605 kb on + strand, within PP_4971 at 5663.605 kb on + strand, within PP_4971 at 5663.605 kb on + strand, within PP_4971 at 5663.606 kb on - strand, within PP_4971 at 5663.606 kb on - strand, within PP_4971 at 5663.606 kb on - strand, within PP_4971 at 5663.606 kb on - strand, within PP_4971 at 5663.606 kb on - strand, within PP_4971 at 5663.617 kb on + strand, within PP_4971 at 5663.707 kb on + strand, within PP_4971 at 5664.039 kb on - strand, within PP_4971 at 5664.067 kb on + strand, within PP_4971 at 5664.067 kb on + strand, within PP_4971 at 5664.067 kb on + strand, within PP_4971 at 5664.068 kb on - strand, within PP_4971 at 5664.068 kb on - strand, within PP_4971 at 5664.068 kb on - strand, within PP_4971 at 5664.068 kb on - strand, within PP_4971 at 5664.072 kb on - strand, within PP_4971 at 5664.125 kb on + strand, within PP_4971 at 5664.125 kb on + strand, within PP_4971 at 5664.126 kb on - strand, within PP_4971 at 5664.390 kb on - strand at 5664.399 kb on - strand at 5664.399 kb on - strand at 5664.399 kb on - strand at 5664.541 kb on + strand, within PP_4972 at 5664.541 kb on + strand, within PP_4972 at 5664.553 kb on + strand, within PP_4972 at 5664.553 kb on + strand, within PP_4972 at 5664.554 kb on - strand, within PP_4972 at 5664.554 kb on - strand, within PP_4972 at 5664.572 kb on + strand, within PP_4972 at 5664.573 kb on - strand, within PP_4972 at 5664.573 kb on - strand, within PP_4972 at 5664.574 kb on + strand, within PP_4972 at 5664.574 kb on + strand, within PP_4972 at 5664.574 kb on + strand, within PP_4972 at 5664.574 kb on + strand, within PP_4972 at 5664.574 kb on + strand, within PP_4972 at 5664.574 kb on + strand, within PP_4972 at 5664.574 kb on + strand, within PP_4972 at 5664.574 kb on + strand, within PP_4972 at 5664.574 kb on + strand, within PP_4972 at 5664.574 kb on + strand, within PP_4972 at 5664.574 kb on + strand, within PP_4972 at 5664.575 kb on - strand, within PP_4972 at 5664.575 kb on - strand, within PP_4972 at 5664.575 kb on - strand, within PP_4972 at 5664.575 kb on - strand, within PP_4972 at 5664.575 kb on - strand, within PP_4972 at 5664.575 kb on - strand, within PP_4972 at 5664.575 kb on - strand, within PP_4972 at 5664.575 kb on - strand, within PP_4972 at 5664.575 kb on - strand, within PP_4972 at 5664.575 kb on - strand, within PP_4972 at 5664.575 kb on - strand, within PP_4972 at 5664.668 kb on - strand, within PP_4972 at 5664.668 kb on - strand, within PP_4972 at 5664.717 kb on - strand, within PP_4972 at 5664.883 kb on + strand at 5664.884 kb on - strand at 5664.916 kb on + strand at 5664.916 kb on + strand at 5664.917 kb on - strand at 5665.049 kb on + strand, within PP_4973 at 5665.050 kb on - strand, within PP_4973 at 5665.111 kb on + strand, within PP_4973 at 5665.111 kb on + strand, within PP_4973 at 5665.111 kb on + strand, within PP_4973 at 5665.112 kb on - strand, within PP_4973 at 5665.133 kb on - strand, within PP_4973 at 5665.133 kb on - strand, within PP_4973 at 5665.187 kb on + strand, within PP_4973 at 5665.187 kb on + strand, within PP_4973 at 5665.238 kb on + strand, within PP_4973 at 5665.238 kb on + strand, within PP_4973 at 5665.239 kb on - strand, within PP_4973
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 0.1 remove 5,663,128 + +0.1 5,663,129 - -0.0 5,663,129 - +1.0 5,663,151 + +1.1 5,663,151 + -0.9 5,663,205 + +0.2 5,663,205 + -0.3 5,663,205 + -1.5 5,663,362 + PP_4971 0.11 -0.9 5,663,362 + PP_4971 0.11 -1.4 5,663,362 + PP_4971 0.11 -3.8 5,663,363 - PP_4971 0.12 -0.5 5,663,363 - PP_4971 0.12 -1.3 5,663,363 - PP_4971 0.12 -2.4 5,663,363 - PP_4971 0.12 -3.0 5,663,425 + PP_4971 0.17 -3.5 5,663,426 - PP_4971 0.17 -1.5 5,663,426 - PP_4971 0.17 -0.9 5,663,426 - PP_4971 0.17 -2.8 5,663,426 - PP_4971 0.17 -0.3 5,663,426 - PP_4971 0.17 -1.1 5,663,555 - PP_4971 0.28 -1.5 5,663,555 - PP_4971 0.28 -1.4 5,663,555 - PP_4971 0.28 -1.4 5,663,555 - PP_4971 0.28 -3.1 5,663,605 + PP_4971 0.32 -0.5 5,663,605 + PP_4971 0.32 -0.4 5,663,605 + PP_4971 0.32 -2.0 5,663,606 - PP_4971 0.32 -0.1 5,663,606 - PP_4971 0.32 -1.5 5,663,606 - PP_4971 0.32 -3.1 5,663,606 - PP_4971 0.32 -4.4 5,663,606 - PP_4971 0.32 -1.6 5,663,617 + PP_4971 0.33 -0.1 5,663,707 + PP_4971 0.41 -3.0 5,664,039 - PP_4971 0.69 -0.0 5,664,067 + PP_4971 0.71 -1.9 5,664,067 + PP_4971 0.71 -1.3 5,664,067 + PP_4971 0.71 -0.5 5,664,068 - PP_4971 0.71 -1.8 5,664,068 - PP_4971 0.71 -1.9 5,664,068 - PP_4971 0.71 -0.1 5,664,068 - PP_4971 0.71 -2.9 5,664,072 - PP_4971 0.72 -1.3 5,664,125 + PP_4971 0.76 -2.7 5,664,125 + PP_4971 0.76 -1.9 5,664,126 - PP_4971 0.76 -1.2 5,664,390 - +0.1 5,664,399 - +0.4 5,664,399 - +1.1 5,664,399 - -0.3 5,664,541 + PP_4972 0.22 +1.4 5,664,541 + PP_4972 0.22 -0.0 5,664,553 + PP_4972 0.25 +0.5 5,664,553 + PP_4972 0.25 -1.8 5,664,554 - PP_4972 0.25 -0.4 5,664,554 - PP_4972 0.25 +0.5 5,664,572 + PP_4972 0.30 +1.0 5,664,573 - PP_4972 0.30 -1.5 5,664,573 - PP_4972 0.30 -0.1 5,664,574 + PP_4972 0.30 -1.0 5,664,574 + PP_4972 0.30 -0.2 5,664,574 + PP_4972 0.30 -1.6 5,664,574 + PP_4972 0.30 -0.4 5,664,574 + PP_4972 0.30 -2.2 5,664,574 + PP_4972 0.30 -1.0 5,664,574 + PP_4972 0.30 +0.1 5,664,574 + PP_4972 0.30 +0.5 5,664,574 + PP_4972 0.30 +0.9 5,664,574 + PP_4972 0.30 +1.1 5,664,574 + PP_4972 0.30 -0.4 5,664,575 - PP_4972 0.31 +0.6 5,664,575 - PP_4972 0.31 +0.4 5,664,575 - PP_4972 0.31 -2.5 5,664,575 - PP_4972 0.31 +0.8 5,664,575 - PP_4972 0.31 +0.1 5,664,575 - PP_4972 0.31 -0.0 5,664,575 - PP_4972 0.31 -0.5 5,664,575 - PP_4972 0.31 -0.5 5,664,575 - PP_4972 0.31 -0.5 5,664,575 - PP_4972 0.31 -0.0 5,664,575 - PP_4972 0.31 +1.0 5,664,668 - PP_4972 0.55 +0.1 5,664,668 - PP_4972 0.55 +0.4 5,664,717 - PP_4972 0.67 +0.7 5,664,883 + -0.7 5,664,884 - -2.9 5,664,916 + +0.1 5,664,916 + +0.3 5,664,917 - -1.5 5,665,049 + PP_4973 0.21 +0.4 5,665,050 - PP_4973 0.21 -0.1 5,665,111 + PP_4973 0.29 +0.0 5,665,111 + PP_4973 0.29 -0.9 5,665,111 + PP_4973 0.29 +0.2 5,665,112 - PP_4973 0.29 +0.3 5,665,133 - PP_4973 0.31 +0.1 5,665,133 - PP_4973 0.31 -0.0 5,665,187 + PP_4973 0.38 -1.2 5,665,187 + PP_4973 0.38 -0.0 5,665,238 + PP_4973 0.44 -3.6 5,665,238 + PP_4973 0.44 +0.2 5,665,239 - PP_4973 0.44 -0.5
Or see this region's nucleotide sequence