Strain Fitness in Pseudomonas putida KT2440 around PP_4971

Experiment: P. putida South MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4969 and PP_4970 are separated by 74 nucleotidesPP_4970 and PP_4971 are separated by 83 nucleotidesPP_4971 and PP_4972 are separated by 50 nucleotidesPP_4972 and PP_4973 are separated by 28 nucleotides PP_4969: PP_4969 - conserved exported protein of unknown function, at 5,662,209 to 5,662,601 _4969 PP_4970: PP_4970 - putative Cytochrome c', at 5,662,676 to 5,663,143 _4970 PP_4971: PP_4971 - putative Outer membrane-bound lytic murein transglycolase A, at 5,663,227 to 5,664,405 _4971 PP_4972: PP_4972 - conserved exported protein of unknown function, at 5,664,456 to 5,664,842 _4972 PP_4973: PP_4973 - conserved membrane protein of unknown function, at 5,664,871 to 5,665,704 _4973 Position (kb) 5663 5664 5665Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5663.128 kb on + strandat 5663.129 kb on - strandat 5663.129 kb on - strandat 5663.151 kb on + strandat 5663.151 kb on + strandat 5663.205 kb on + strandat 5663.205 kb on + strandat 5663.205 kb on + strandat 5663.362 kb on + strand, within PP_4971at 5663.362 kb on + strand, within PP_4971at 5663.362 kb on + strand, within PP_4971at 5663.363 kb on - strand, within PP_4971at 5663.363 kb on - strand, within PP_4971at 5663.363 kb on - strand, within PP_4971at 5663.363 kb on - strand, within PP_4971at 5663.425 kb on + strand, within PP_4971at 5663.426 kb on - strand, within PP_4971at 5663.426 kb on - strand, within PP_4971at 5663.426 kb on - strand, within PP_4971at 5663.426 kb on - strand, within PP_4971at 5663.426 kb on - strand, within PP_4971at 5663.555 kb on - strand, within PP_4971at 5663.555 kb on - strand, within PP_4971at 5663.555 kb on - strand, within PP_4971at 5663.555 kb on - strand, within PP_4971at 5663.605 kb on + strand, within PP_4971at 5663.605 kb on + strand, within PP_4971at 5663.605 kb on + strand, within PP_4971at 5663.606 kb on - strand, within PP_4971at 5663.606 kb on - strand, within PP_4971at 5663.606 kb on - strand, within PP_4971at 5663.606 kb on - strand, within PP_4971at 5663.606 kb on - strand, within PP_4971at 5663.617 kb on + strand, within PP_4971at 5663.707 kb on + strand, within PP_4971at 5664.039 kb on - strand, within PP_4971at 5664.067 kb on + strand, within PP_4971at 5664.067 kb on + strand, within PP_4971at 5664.067 kb on + strand, within PP_4971at 5664.068 kb on - strand, within PP_4971at 5664.068 kb on - strand, within PP_4971at 5664.068 kb on - strand, within PP_4971at 5664.068 kb on - strand, within PP_4971at 5664.072 kb on - strand, within PP_4971at 5664.125 kb on + strand, within PP_4971at 5664.125 kb on + strand, within PP_4971at 5664.126 kb on - strand, within PP_4971at 5664.390 kb on - strandat 5664.399 kb on - strandat 5664.399 kb on - strandat 5664.399 kb on - strandat 5664.541 kb on + strand, within PP_4972at 5664.541 kb on + strand, within PP_4972at 5664.553 kb on + strand, within PP_4972at 5664.553 kb on + strand, within PP_4972at 5664.554 kb on - strand, within PP_4972at 5664.554 kb on - strand, within PP_4972at 5664.572 kb on + strand, within PP_4972at 5664.573 kb on - strand, within PP_4972at 5664.573 kb on - strand, within PP_4972at 5664.574 kb on + strand, within PP_4972at 5664.574 kb on + strand, within PP_4972at 5664.574 kb on + strand, within PP_4972at 5664.574 kb on + strand, within PP_4972at 5664.574 kb on + strand, within PP_4972at 5664.574 kb on + strand, within PP_4972at 5664.574 kb on + strand, within PP_4972at 5664.574 kb on + strand, within PP_4972at 5664.574 kb on + strand, within PP_4972at 5664.574 kb on + strand, within PP_4972at 5664.574 kb on + strand, within PP_4972at 5664.575 kb on - strand, within PP_4972at 5664.575 kb on - strand, within PP_4972at 5664.575 kb on - strand, within PP_4972at 5664.575 kb on - strand, within PP_4972at 5664.575 kb on - strand, within PP_4972at 5664.575 kb on - strand, within PP_4972at 5664.575 kb on - strand, within PP_4972at 5664.575 kb on - strand, within PP_4972at 5664.575 kb on - strand, within PP_4972at 5664.575 kb on - strand, within PP_4972at 5664.575 kb on - strand, within PP_4972at 5664.668 kb on - strand, within PP_4972at 5664.668 kb on - strand, within PP_4972at 5664.717 kb on - strand, within PP_4972at 5664.883 kb on + strandat 5664.884 kb on - strandat 5664.916 kb on + strandat 5664.916 kb on + strandat 5664.917 kb on - strandat 5665.049 kb on + strand, within PP_4973at 5665.050 kb on - strand, within PP_4973at 5665.111 kb on + strand, within PP_4973at 5665.111 kb on + strand, within PP_4973at 5665.111 kb on + strand, within PP_4973at 5665.112 kb on - strand, within PP_4973at 5665.133 kb on - strand, within PP_4973at 5665.133 kb on - strand, within PP_4973at 5665.187 kb on + strand, within PP_4973at 5665.187 kb on + strand, within PP_4973at 5665.238 kb on + strand, within PP_4973at 5665.238 kb on + strand, within PP_4973at 5665.239 kb on - strand, within PP_4973

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
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5,663,128 + +0.1
5,663,129 - -0.0
5,663,129 - +1.0
5,663,151 + +1.1
5,663,151 + -0.9
5,663,205 + +0.2
5,663,205 + -0.3
5,663,205 + -1.5
5,663,362 + PP_4971 0.11 -0.9
5,663,362 + PP_4971 0.11 -1.4
5,663,362 + PP_4971 0.11 -3.8
5,663,363 - PP_4971 0.12 -0.5
5,663,363 - PP_4971 0.12 -1.3
5,663,363 - PP_4971 0.12 -2.4
5,663,363 - PP_4971 0.12 -3.0
5,663,425 + PP_4971 0.17 -3.5
5,663,426 - PP_4971 0.17 -1.5
5,663,426 - PP_4971 0.17 -0.9
5,663,426 - PP_4971 0.17 -2.8
5,663,426 - PP_4971 0.17 -0.3
5,663,426 - PP_4971 0.17 -1.1
5,663,555 - PP_4971 0.28 -1.5
5,663,555 - PP_4971 0.28 -1.4
5,663,555 - PP_4971 0.28 -1.4
5,663,555 - PP_4971 0.28 -3.1
5,663,605 + PP_4971 0.32 -0.5
5,663,605 + PP_4971 0.32 -0.4
5,663,605 + PP_4971 0.32 -2.0
5,663,606 - PP_4971 0.32 -0.1
5,663,606 - PP_4971 0.32 -1.5
5,663,606 - PP_4971 0.32 -3.1
5,663,606 - PP_4971 0.32 -4.4
5,663,606 - PP_4971 0.32 -1.6
5,663,617 + PP_4971 0.33 -0.1
5,663,707 + PP_4971 0.41 -3.0
5,664,039 - PP_4971 0.69 -0.0
5,664,067 + PP_4971 0.71 -1.9
5,664,067 + PP_4971 0.71 -1.3
5,664,067 + PP_4971 0.71 -0.5
5,664,068 - PP_4971 0.71 -1.8
5,664,068 - PP_4971 0.71 -1.9
5,664,068 - PP_4971 0.71 -0.1
5,664,068 - PP_4971 0.71 -2.9
5,664,072 - PP_4971 0.72 -1.3
5,664,125 + PP_4971 0.76 -2.7
5,664,125 + PP_4971 0.76 -1.9
5,664,126 - PP_4971 0.76 -1.2
5,664,390 - +0.1
5,664,399 - +0.4
5,664,399 - +1.1
5,664,399 - -0.3
5,664,541 + PP_4972 0.22 +1.4
5,664,541 + PP_4972 0.22 -0.0
5,664,553 + PP_4972 0.25 +0.5
5,664,553 + PP_4972 0.25 -1.8
5,664,554 - PP_4972 0.25 -0.4
5,664,554 - PP_4972 0.25 +0.5
5,664,572 + PP_4972 0.30 +1.0
5,664,573 - PP_4972 0.30 -1.5
5,664,573 - PP_4972 0.30 -0.1
5,664,574 + PP_4972 0.30 -1.0
5,664,574 + PP_4972 0.30 -0.2
5,664,574 + PP_4972 0.30 -1.6
5,664,574 + PP_4972 0.30 -0.4
5,664,574 + PP_4972 0.30 -2.2
5,664,574 + PP_4972 0.30 -1.0
5,664,574 + PP_4972 0.30 +0.1
5,664,574 + PP_4972 0.30 +0.5
5,664,574 + PP_4972 0.30 +0.9
5,664,574 + PP_4972 0.30 +1.1
5,664,574 + PP_4972 0.30 -0.4
5,664,575 - PP_4972 0.31 +0.6
5,664,575 - PP_4972 0.31 +0.4
5,664,575 - PP_4972 0.31 -2.5
5,664,575 - PP_4972 0.31 +0.8
5,664,575 - PP_4972 0.31 +0.1
5,664,575 - PP_4972 0.31 -0.0
5,664,575 - PP_4972 0.31 -0.5
5,664,575 - PP_4972 0.31 -0.5
5,664,575 - PP_4972 0.31 -0.5
5,664,575 - PP_4972 0.31 -0.0
5,664,575 - PP_4972 0.31 +1.0
5,664,668 - PP_4972 0.55 +0.1
5,664,668 - PP_4972 0.55 +0.4
5,664,717 - PP_4972 0.67 +0.7
5,664,883 + -0.7
5,664,884 - -2.9
5,664,916 + +0.1
5,664,916 + +0.3
5,664,917 - -1.5
5,665,049 + PP_4973 0.21 +0.4
5,665,050 - PP_4973 0.21 -0.1
5,665,111 + PP_4973 0.29 +0.0
5,665,111 + PP_4973 0.29 -0.9
5,665,111 + PP_4973 0.29 +0.2
5,665,112 - PP_4973 0.29 +0.3
5,665,133 - PP_4973 0.31 +0.1
5,665,133 - PP_4973 0.31 -0.0
5,665,187 + PP_4973 0.38 -1.2
5,665,187 + PP_4973 0.38 -0.0
5,665,238 + PP_4973 0.44 -3.6
5,665,238 + PP_4973 0.44 +0.2
5,665,239 - PP_4973 0.44 -0.5

Or see this region's nucleotide sequence