Experiment: P. putida South MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4670 and PP_4671 overlap by 4 nucleotides PP_4671 and PP_4672 are separated by 100 nucleotides PP_4672 and PP_4673 overlap by 4 nucleotides
PP_4670: PP_4670 - diguanylate cyclase, at 5,296,091 to 5,297,362
_4670
PP_4671: PP_4671 - conserved exported protein of unknown function, at 5,297,359 to 5,297,925
_4671
PP_4672: PP_4672 - ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease, at 5,298,026 to 5,300,101
_4672
PP_4673: PP_4673 - Chi activated ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, at 5,300,098 to 5,303,772
_4673
Position (kb) 5298
5299
5300
5301 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5297.174 kb on + strand, within PP_4670 at 5297.174 kb on + strand, within PP_4670 at 5297.174 kb on + strand, within PP_4670 at 5297.175 kb on - strand, within PP_4670 at 5297.175 kb on - strand, within PP_4670 at 5297.175 kb on - strand, within PP_4670 at 5297.175 kb on - strand, within PP_4670 at 5297.181 kb on + strand, within PP_4670 at 5297.182 kb on - strand, within PP_4670 at 5297.182 kb on - strand, within PP_4670 at 5297.182 kb on - strand, within PP_4670 at 5297.212 kb on + strand, within PP_4670 at 5297.223 kb on + strand, within PP_4670 at 5297.223 kb on + strand, within PP_4670 at 5297.224 kb on - strand, within PP_4670 at 5297.548 kb on - strand, within PP_4671 at 5297.548 kb on - strand, within PP_4671 at 5297.594 kb on + strand, within PP_4671 at 5297.594 kb on + strand, within PP_4671 at 5297.703 kb on - strand, within PP_4671 at 5297.703 kb on - strand, within PP_4671 at 5297.731 kb on + strand, within PP_4671 at 5297.731 kb on + strand, within PP_4671 at 5297.731 kb on + strand, within PP_4671 at 5297.762 kb on + strand, within PP_4671 at 5297.763 kb on - strand, within PP_4671 at 5297.772 kb on + strand, within PP_4671 at 5297.779 kb on + strand, within PP_4671 at 5297.779 kb on + strand, within PP_4671 at 5297.780 kb on - strand, within PP_4671 at 5297.780 kb on - strand, within PP_4671 at 5297.780 kb on - strand, within PP_4671 at 5297.782 kb on + strand, within PP_4671 at 5297.782 kb on + strand, within PP_4671 at 5297.782 kb on + strand, within PP_4671 at 5297.782 kb on + strand, within PP_4671 at 5297.940 kb on + strand at 5297.941 kb on - strand at 5297.968 kb on + strand at 5297.968 kb on + strand at 5297.969 kb on - strand at 5297.984 kb on + strand at 5297.984 kb on + strand at 5297.985 kb on - strand at 5297.985 kb on - strand at 5297.989 kb on + strand at 5297.989 kb on + strand at 5297.989 kb on + strand at 5297.990 kb on - strand at 5297.990 kb on - strand at 5298.009 kb on + strand at 5298.009 kb on + strand at 5298.009 kb on + strand at 5298.010 kb on - strand at 5298.010 kb on - strand at 5298.027 kb on + strand at 5298.055 kb on + strand at 5298.056 kb on - strand at 5298.062 kb on + strand at 5298.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 0.1 remove 5,297,174 + PP_4670 0.85 -0.2 5,297,174 + PP_4670 0.85 -0.4 5,297,174 + PP_4670 0.85 +0.2 5,297,175 - PP_4670 0.85 -0.3 5,297,175 - PP_4670 0.85 +0.4 5,297,175 - PP_4670 0.85 +0.1 5,297,175 - PP_4670 0.85 +1.1 5,297,181 + PP_4670 0.86 -0.4 5,297,182 - PP_4670 0.86 -1.8 5,297,182 - PP_4670 0.86 -0.6 5,297,182 - PP_4670 0.86 -0.9 5,297,212 + PP_4670 0.88 -0.6 5,297,223 + PP_4670 0.89 -2.9 5,297,223 + PP_4670 0.89 -0.3 5,297,224 - PP_4670 0.89 -2.0 5,297,548 - PP_4671 0.33 +1.7 5,297,548 - PP_4671 0.33 -2.6 5,297,594 + PP_4671 0.41 +1.5 5,297,594 + PP_4671 0.41 +0.3 5,297,703 - PP_4671 0.61 -3.3 5,297,703 - PP_4671 0.61 -2.2 5,297,731 + PP_4671 0.66 +0.8 5,297,731 + PP_4671 0.66 +0.6 5,297,731 + PP_4671 0.66 -0.2 5,297,762 + PP_4671 0.71 -0.1 5,297,763 - PP_4671 0.71 -2.6 5,297,772 + PP_4671 0.73 +0.6 5,297,779 + PP_4671 0.74 -0.8 5,297,779 + PP_4671 0.74 +0.0 5,297,780 - PP_4671 0.74 -0.6 5,297,780 - PP_4671 0.74 -1.2 5,297,780 - PP_4671 0.74 -0.8 5,297,782 + PP_4671 0.75 -1.4 5,297,782 + PP_4671 0.75 -0.8 5,297,782 + PP_4671 0.75 +0.2 5,297,782 + PP_4671 0.75 -0.7 5,297,940 + +0.7 5,297,941 - +0.9 5,297,968 + +0.1 5,297,968 + -1.0 5,297,969 - -1.3 5,297,984 + -0.1 5,297,984 + +1.5 5,297,985 - +0.2 5,297,985 - -1.6 5,297,989 + +0.2 5,297,989 + +0.4 5,297,989 + +0.4 5,297,990 - +0.4 5,297,990 - +1.0 5,298,009 + -0.0 5,298,009 + -0.2 5,298,009 + -0.4 5,298,010 - +0.8 5,298,010 - -0.1 5,298,027 + +0.2 5,298,055 + +0.0 5,298,056 - -0.5 5,298,062 + +0.5 5,298,063 - -1.3
Or see this region's nucleotide sequence