Experiment: P. putida South MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4651 and PP_4652 are separated by 343 nucleotides PP_4652 and PP_4653 are separated by 229 nucleotides
PP_4651: PP_4651 - Ubiquinol oxidase subunit I, cyanide insensitive, at 5,275,260 to 5,276,696
_4651
PP_4652: PP_4652 - putative Membrane protein, at 5,277,040 to 5,278,260
_4652
PP_4653: PP_4653 - adenine:H+ symporter, at 5,278,490 to 5,279,785
_4653
Position (kb) 5277
5278
5279 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5276.270 kb on + strand at 5276.270 kb on + strand, within PP_4651 at 5276.271 kb on - strand, within PP_4651 at 5276.271 kb on - strand, within PP_4651 at 5276.292 kb on + strand, within PP_4651 at 5276.391 kb on + strand, within PP_4651 at 5276.392 kb on - strand, within PP_4651 at 5276.392 kb on - strand at 5276.399 kb on - strand, within PP_4651 at 5276.399 kb on - strand, within PP_4651 at 5276.399 kb on - strand, within PP_4651 at 5276.399 kb on - strand, within PP_4651 at 5276.536 kb on + strand, within PP_4651 at 5276.536 kb on + strand, within PP_4651 at 5276.537 kb on - strand, within PP_4651 at 5276.548 kb on + strand, within PP_4651 at 5276.549 kb on - strand, within PP_4651 at 5276.574 kb on + strand at 5276.676 kb on + strand at 5276.676 kb on + strand at 5276.677 kb on - strand at 5276.677 kb on - strand at 5276.685 kb on + strand at 5276.686 kb on - strand at 5276.715 kb on - strand at 5276.769 kb on + strand at 5276.873 kb on - strand at 5276.873 kb on - strand at 5276.940 kb on + strand at 5276.940 kb on + strand at 5276.941 kb on - strand at 5276.941 kb on - strand at 5276.997 kb on + strand at 5276.997 kb on + strand at 5276.997 kb on + strand at 5276.998 kb on - strand at 5277.014 kb on + strand at 5277.160 kb on + strand at 5277.160 kb on + strand at 5277.161 kb on - strand at 5277.262 kb on + strand, within PP_4652 at 5277.263 kb on - strand, within PP_4652 at 5277.535 kb on + strand, within PP_4652 at 5277.535 kb on + strand, within PP_4652 at 5277.536 kb on - strand, within PP_4652 at 5277.536 kb on - strand, within PP_4652 at 5277.560 kb on - strand, within PP_4652 at 5277.580 kb on + strand at 5277.581 kb on - strand, within PP_4652 at 5277.581 kb on - strand, within PP_4652 at 5277.581 kb on - strand, within PP_4652 at 5277.735 kb on - strand, within PP_4652 at 5277.768 kb on - strand, within PP_4652 at 5277.768 kb on - strand, within PP_4652 at 5278.152 kb on + strand at 5278.153 kb on - strand at 5278.211 kb on + strand at 5278.354 kb on + strand at 5278.354 kb on + strand at 5278.355 kb on - strand at 5278.377 kb on + strand at 5278.377 kb on + strand at 5278.377 kb on + strand at 5278.378 kb on - strand at 5278.453 kb on + strand at 5278.453 kb on + strand at 5278.454 kb on - strand at 5278.454 kb on - strand at 5278.512 kb on + strand at 5278.512 kb on + strand at 5278.512 kb on + strand at 5278.513 kb on - strand at 5278.513 kb on - strand at 5278.580 kb on + strand at 5278.580 kb on + strand at 5278.581 kb on - strand at 5278.581 kb on - strand at 5278.581 kb on - strand at 5278.581 kb on - strand at 5278.581 kb on - strand at 5278.581 kb on - strand at 5278.701 kb on - strand, within PP_4653 at 5278.748 kb on + strand, within PP_4653 at 5278.749 kb on - strand, within PP_4653 at 5278.749 kb on - strand, within PP_4653 at 5278.749 kb on - strand, within PP_4653
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 0.1 remove 5,276,270 + +2.0 5,276,270 + PP_4651 0.70 -0.5 5,276,271 - PP_4651 0.70 +0.9 5,276,271 - PP_4651 0.70 +0.7 5,276,292 + PP_4651 0.72 -1.5 5,276,391 + PP_4651 0.79 +0.6 5,276,392 - PP_4651 0.79 +0.2 5,276,392 - +0.4 5,276,399 - PP_4651 0.79 -0.9 5,276,399 - PP_4651 0.79 +0.9 5,276,399 - PP_4651 0.79 +0.1 5,276,399 - PP_4651 0.79 -1.9 5,276,536 + PP_4651 0.89 -0.1 5,276,536 + PP_4651 0.89 +0.4 5,276,537 - PP_4651 0.89 -1.3 5,276,548 + PP_4651 0.90 -0.2 5,276,549 - PP_4651 0.90 -0.7 5,276,574 + -0.0 5,276,676 + +1.7 5,276,676 + -0.5 5,276,677 - +0.5 5,276,677 - -0.7 5,276,685 + -1.0 5,276,686 - +0.1 5,276,715 - -1.4 5,276,769 + +0.4 5,276,873 - +0.6 5,276,873 - -0.7 5,276,940 + +0.6 5,276,940 + -0.4 5,276,941 - -0.4 5,276,941 - -0.4 5,276,997 + +0.4 5,276,997 + +0.8 5,276,997 + +0.6 5,276,998 - -0.8 5,277,014 + +1.0 5,277,160 + -1.2 5,277,160 + -0.6 5,277,161 - +0.4 5,277,262 + PP_4652 0.18 -0.7 5,277,263 - PP_4652 0.18 +0.2 5,277,535 + PP_4652 0.41 -0.6 5,277,535 + PP_4652 0.41 -0.3 5,277,536 - PP_4652 0.41 +0.2 5,277,536 - PP_4652 0.41 +0.2 5,277,560 - PP_4652 0.43 -0.6 5,277,580 + -0.9 5,277,581 - PP_4652 0.44 +0.2 5,277,581 - PP_4652 0.44 -1.3 5,277,581 - PP_4652 0.44 +0.2 5,277,735 - PP_4652 0.57 -0.7 5,277,768 - PP_4652 0.60 -0.6 5,277,768 - PP_4652 0.60 +0.5 5,278,152 + -0.1 5,278,153 - +0.7 5,278,211 + +0.8 5,278,354 + +0.4 5,278,354 + +0.4 5,278,355 - -0.9 5,278,377 + -0.5 5,278,377 + -0.3 5,278,377 + -0.5 5,278,378 - +1.1 5,278,453 + +0.1 5,278,453 + -0.0 5,278,454 - +1.2 5,278,454 - +0.8 5,278,512 + +1.9 5,278,512 + +1.9 5,278,512 + +1.9 5,278,513 - +1.5 5,278,513 - +1.6 5,278,580 + +1.6 5,278,580 + +0.4 5,278,581 - +2.3 5,278,581 - +0.8 5,278,581 - +1.0 5,278,581 - +0.2 5,278,581 - +1.7 5,278,581 - +1.9 5,278,701 - PP_4653 0.16 +2.4 5,278,748 + PP_4653 0.20 +0.5 5,278,749 - PP_4653 0.20 +0.4 5,278,749 - PP_4653 0.20 +1.7 5,278,749 - PP_4653 0.20 +1.6
Or see this region's nucleotide sequence