Experiment: P. putida South MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3955 and PP_3956 overlap by 4 nucleotides PP_3956 and PP_3957 are separated by 27 nucleotides PP_3957 and PP_3958 are separated by 303 nucleotides
PP_3955: PP_3955 - permease, at 4,461,513 to 4,463,540
_3955
PP_3956: PP_3956 - conserved protein of unknown function, at 4,463,537 to 4,463,953
_3956
PP_3957: PP_3957 - choline/carnitine/betaine transporter BetTC, at 4,463,981 to 4,465,954
_3957
PP_3958: PP_3958 - Na(+)/H(+) antiporter NhaA 2, at 4,466,258 to 4,467,619
_3958
Position (kb)
4463
4464
4465
4466 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4463.008 kb on + strand, within PP_3955 at 4463.008 kb on + strand, within PP_3955 at 4463.008 kb on + strand, within PP_3955 at 4463.009 kb on - strand, within PP_3955 at 4463.040 kb on + strand, within PP_3955 at 4463.040 kb on + strand, within PP_3955 at 4463.040 kb on + strand, within PP_3955 at 4463.040 kb on + strand, within PP_3955 at 4463.041 kb on - strand, within PP_3955 at 4463.041 kb on - strand, within PP_3955 at 4463.041 kb on - strand, within PP_3955 at 4463.041 kb on - strand, within PP_3955 at 4463.041 kb on - strand, within PP_3955 at 4463.122 kb on - strand, within PP_3955 at 4463.269 kb on - strand, within PP_3955 at 4463.269 kb on - strand, within PP_3955 at 4463.269 kb on - strand, within PP_3955 at 4463.316 kb on + strand, within PP_3955 at 4463.316 kb on + strand, within PP_3955 at 4463.316 kb on + strand, within PP_3955 at 4463.316 kb on + strand, within PP_3955 at 4463.317 kb on - strand, within PP_3955 at 4463.317 kb on - strand, within PP_3955 at 4463.317 kb on - strand, within PP_3955 at 4463.317 kb on - strand, within PP_3955 at 4463.317 kb on - strand, within PP_3955 at 4463.317 kb on - strand, within PP_3955 at 4463.437 kb on + strand at 4463.437 kb on + strand at 4463.502 kb on + strand at 4463.600 kb on - strand, within PP_3956 at 4463.649 kb on - strand, within PP_3956 at 4463.649 kb on - strand, within PP_3956 at 4463.649 kb on - strand, within PP_3956 at 4463.673 kb on + strand, within PP_3956 at 4463.769 kb on + strand, within PP_3956 at 4463.769 kb on + strand, within PP_3956 at 4463.770 kb on - strand, within PP_3956 at 4463.858 kb on + strand, within PP_3956 at 4463.859 kb on - strand, within PP_3956 at 4463.866 kb on - strand, within PP_3956 at 4463.866 kb on - strand, within PP_3956 at 4463.895 kb on + strand, within PP_3956 at 4464.000 kb on + strand at 4464.000 kb on + strand at 4464.000 kb on + strand at 4464.000 kb on + strand at 4464.001 kb on - strand at 4464.001 kb on - strand at 4464.001 kb on - strand at 4464.018 kb on + strand at 4464.019 kb on - strand at 4464.019 kb on - strand at 4464.019 kb on - strand at 4464.115 kb on - strand at 4464.166 kb on + strand at 4464.167 kb on - strand at 4464.193 kb on - strand, within PP_3957 at 4464.193 kb on - strand, within PP_3957 at 4464.233 kb on + strand, within PP_3957 at 4464.233 kb on + strand, within PP_3957 at 4464.234 kb on - strand, within PP_3957 at 4464.332 kb on - strand, within PP_3957 at 4464.371 kb on - strand, within PP_3957 at 4464.596 kb on + strand, within PP_3957 at 4464.596 kb on + strand, within PP_3957 at 4464.839 kb on - strand, within PP_3957 at 4464.839 kb on - strand, within PP_3957 at 4464.839 kb on - strand, within PP_3957 at 4464.943 kb on + strand, within PP_3957 at 4464.944 kb on - strand, within PP_3957 at 4464.944 kb on - strand, within PP_3957 at 4464.944 kb on - strand, within PP_3957 at 4464.996 kb on + strand at 4465.035 kb on + strand, within PP_3957 at 4465.035 kb on + strand, within PP_3957 at 4465.035 kb on + strand, within PP_3957 at 4465.035 kb on + strand, within PP_3957 at 4465.036 kb on - strand, within PP_3957 at 4465.036 kb on - strand, within PP_3957 at 4465.058 kb on - strand, within PP_3957 at 4465.078 kb on - strand, within PP_3957 at 4465.094 kb on + strand, within PP_3957 at 4465.094 kb on + strand, within PP_3957 at 4465.094 kb on + strand, within PP_3957 at 4465.094 kb on + strand, within PP_3957 at 4465.094 kb on + strand, within PP_3957 at 4465.094 kb on + strand, within PP_3957 at 4465.095 kb on - strand, within PP_3957 at 4465.095 kb on - strand, within PP_3957 at 4465.095 kb on - strand, within PP_3957 at 4465.095 kb on - strand, within PP_3957 at 4465.098 kb on + strand, within PP_3957 at 4465.098 kb on + strand, within PP_3957 at 4465.098 kb on + strand, within PP_3957 at 4465.098 kb on + strand, within PP_3957 at 4465.098 kb on + strand, within PP_3957 at 4465.099 kb on - strand, within PP_3957 at 4465.099 kb on - strand, within PP_3957 at 4465.099 kb on - strand, within PP_3957 at 4465.120 kb on + strand, within PP_3957 at 4465.120 kb on + strand, within PP_3957 at 4465.121 kb on - strand, within PP_3957 at 4465.121 kb on - strand, within PP_3957 at 4465.121 kb on - strand, within PP_3957 at 4465.192 kb on + strand, within PP_3957 at 4465.320 kb on - strand, within PP_3957 at 4465.392 kb on - strand, within PP_3957 at 4465.393 kb on + strand, within PP_3957 at 4465.394 kb on - strand, within PP_3957 at 4465.394 kb on - strand, within PP_3957 at 4465.402 kb on - strand, within PP_3957 at 4465.402 kb on - strand, within PP_3957 at 4465.426 kb on - strand, within PP_3957 at 4465.473 kb on + strand, within PP_3957 at 4465.500 kb on + strand, within PP_3957 at 4465.500 kb on + strand, within PP_3957 at 4465.500 kb on + strand, within PP_3957 at 4465.500 kb on + strand, within PP_3957 at 4465.500 kb on + strand, within PP_3957 at 4465.500 kb on + strand, within PP_3957 at 4465.501 kb on - strand, within PP_3957 at 4465.501 kb on - strand, within PP_3957 at 4465.501 kb on - strand, within PP_3957 at 4465.501 kb on - strand, within PP_3957 at 4465.715 kb on + strand, within PP_3957 at 4465.715 kb on + strand, within PP_3957 at 4465.715 kb on + strand, within PP_3957 at 4465.775 kb on + strand at 4465.776 kb on - strand at 4465.776 kb on - strand at 4465.786 kb on + strand at 4465.788 kb on + strand at 4465.788 kb on + strand at 4465.788 kb on + strand at 4465.788 kb on + strand at 4465.788 kb on + strand at 4465.870 kb on - strand at 4465.892 kb on + strand at 4465.892 kb on + strand at 4465.905 kb on + strand at 4465.954 kb on + strand at 4466.011 kb on + strand at 4466.012 kb on - strand at 4466.012 kb on - strand at 4466.012 kb on - strand at 4466.021 kb on - strand at 4466.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 0.1 remove 4,463,008 + PP_3955 0.74 -2.8 4,463,008 + PP_3955 0.74 +0.5 4,463,008 + PP_3955 0.74 -0.1 4,463,009 - PP_3955 0.74 +0.6 4,463,040 + PP_3955 0.75 -0.1 4,463,040 + PP_3955 0.75 -0.0 4,463,040 + PP_3955 0.75 -0.3 4,463,040 + PP_3955 0.75 -0.1 4,463,041 - PP_3955 0.75 +0.1 4,463,041 - PP_3955 0.75 -3.2 4,463,041 - PP_3955 0.75 -0.2 4,463,041 - PP_3955 0.75 +1.5 4,463,041 - PP_3955 0.75 +0.5 4,463,122 - PP_3955 0.79 -0.4 4,463,269 - PP_3955 0.87 -0.2 4,463,269 - PP_3955 0.87 -0.3 4,463,269 - PP_3955 0.87 -0.4 4,463,316 + PP_3955 0.89 +0.4 4,463,316 + PP_3955 0.89 +1.1 4,463,316 + PP_3955 0.89 -1.1 4,463,316 + PP_3955 0.89 -0.6 4,463,317 - PP_3955 0.89 +0.4 4,463,317 - PP_3955 0.89 +0.6 4,463,317 - PP_3955 0.89 -1.5 4,463,317 - PP_3955 0.89 -0.2 4,463,317 - PP_3955 0.89 +0.9 4,463,317 - PP_3955 0.89 -2.1 4,463,437 + +0.9 4,463,437 + +0.8 4,463,502 + -1.6 4,463,600 - PP_3956 0.15 -2.2 4,463,649 - PP_3956 0.27 +0.1 4,463,649 - PP_3956 0.27 +0.8 4,463,649 - PP_3956 0.27 -2.2 4,463,673 + PP_3956 0.33 +0.2 4,463,769 + PP_3956 0.56 +0.8 4,463,769 + PP_3956 0.56 -0.5 4,463,770 - PP_3956 0.56 +0.9 4,463,858 + PP_3956 0.77 +0.5 4,463,859 - PP_3956 0.77 -3.9 4,463,866 - PP_3956 0.79 -0.8 4,463,866 - PP_3956 0.79 +1.0 4,463,895 + PP_3956 0.86 +1.0 4,464,000 + +1.3 4,464,000 + +2.0 4,464,000 + +0.8 4,464,000 + +0.7 4,464,001 - +0.9 4,464,001 - +1.9 4,464,001 - -0.1 4,464,018 + +0.3 4,464,019 - +0.5 4,464,019 - +2.2 4,464,019 - +2.5 4,464,115 - +1.1 4,464,166 + +1.1 4,464,167 - +2.6 4,464,193 - PP_3957 0.11 +1.6 4,464,193 - PP_3957 0.11 +1.0 4,464,233 + PP_3957 0.13 +1.2 4,464,233 + PP_3957 0.13 +0.9 4,464,234 - PP_3957 0.13 +2.1 4,464,332 - PP_3957 0.18 +0.9 4,464,371 - PP_3957 0.20 +1.0 4,464,596 + PP_3957 0.31 +1.2 4,464,596 + PP_3957 0.31 +2.1 4,464,839 - PP_3957 0.43 +2.1 4,464,839 - PP_3957 0.43 +2.5 4,464,839 - PP_3957 0.43 +1.6 4,464,943 + PP_3957 0.49 +0.9 4,464,944 - PP_3957 0.49 +0.3 4,464,944 - PP_3957 0.49 +0.9 4,464,944 - PP_3957 0.49 +1.3 4,464,996 + +0.3 4,465,035 + PP_3957 0.53 +2.7 4,465,035 + PP_3957 0.53 +1.0 4,465,035 + PP_3957 0.53 +2.3 4,465,035 + PP_3957 0.53 +2.0 4,465,036 - PP_3957 0.53 +1.6 4,465,036 - PP_3957 0.53 +1.8 4,465,058 - PP_3957 0.55 +2.0 4,465,078 - PP_3957 0.56 +0.0 4,465,094 + PP_3957 0.56 +1.7 4,465,094 + PP_3957 0.56 +1.2 4,465,094 + PP_3957 0.56 +1.6 4,465,094 + PP_3957 0.56 +1.2 4,465,094 + PP_3957 0.56 +1.2 4,465,094 + PP_3957 0.56 +2.1 4,465,095 - PP_3957 0.56 +1.9 4,465,095 - PP_3957 0.56 +0.6 4,465,095 - PP_3957 0.56 +1.5 4,465,095 - PP_3957 0.56 +0.4 4,465,098 + PP_3957 0.57 +1.2 4,465,098 + PP_3957 0.57 +1.2 4,465,098 + PP_3957 0.57 +1.7 4,465,098 + PP_3957 0.57 +1.2 4,465,098 + PP_3957 0.57 +1.7 4,465,099 - PP_3957 0.57 +2.2 4,465,099 - PP_3957 0.57 +0.8 4,465,099 - PP_3957 0.57 +0.3 4,465,120 + PP_3957 0.58 +1.4 4,465,120 + PP_3957 0.58 +1.4 4,465,121 - PP_3957 0.58 +1.2 4,465,121 - PP_3957 0.58 +1.6 4,465,121 - PP_3957 0.58 +2.4 4,465,192 + PP_3957 0.61 +1.4 4,465,320 - PP_3957 0.68 +0.7 4,465,392 - PP_3957 0.71 +0.6 4,465,393 + PP_3957 0.72 +1.4 4,465,394 - PP_3957 0.72 +1.7 4,465,394 - PP_3957 0.72 +2.7 4,465,402 - PP_3957 0.72 +1.5 4,465,402 - PP_3957 0.72 +2.3 4,465,426 - PP_3957 0.73 +1.8 4,465,473 + PP_3957 0.76 +1.8 4,465,500 + PP_3957 0.77 +1.7 4,465,500 + PP_3957 0.77 +1.3 4,465,500 + PP_3957 0.77 +0.6 4,465,500 + PP_3957 0.77 +1.4 4,465,500 + PP_3957 0.77 -0.1 4,465,500 + PP_3957 0.77 +1.3 4,465,501 - PP_3957 0.77 +1.9 4,465,501 - PP_3957 0.77 +1.6 4,465,501 - PP_3957 0.77 +0.5 4,465,501 - PP_3957 0.77 +1.8 4,465,715 + PP_3957 0.88 +2.0 4,465,715 + PP_3957 0.88 +1.2 4,465,715 + PP_3957 0.88 +2.0 4,465,775 + +1.1 4,465,776 - +1.4 4,465,776 - +1.5 4,465,786 + +1.3 4,465,788 + +1.2 4,465,788 + +2.4 4,465,788 + +1.6 4,465,788 + +1.2 4,465,788 + +1.3 4,465,870 - +1.3 4,465,892 + +2.0 4,465,892 + +0.2 4,465,905 + +1.6 4,465,954 + +2.5 4,466,011 + +2.0 4,466,012 - -0.2 4,466,012 - +0.8 4,466,012 - +0.1 4,466,021 - -1.5 4,466,168 - -0.2
Or see this region's nucleotide sequence