Strain Fitness in Pseudomonas putida KT2440 around PP_3957

Experiment: P. putida South MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3955 and PP_3956 overlap by 4 nucleotidesPP_3956 and PP_3957 are separated by 27 nucleotidesPP_3957 and PP_3958 are separated by 303 nucleotides PP_3955: PP_3955 - permease, at 4,461,513 to 4,463,540 _3955 PP_3956: PP_3956 - conserved protein of unknown function, at 4,463,537 to 4,463,953 _3956 PP_3957: PP_3957 - choline/carnitine/betaine transporter BetTC, at 4,463,981 to 4,465,954 _3957 PP_3958: PP_3958 - Na(+)/H(+) antiporter NhaA 2, at 4,466,258 to 4,467,619 _3958 Position (kb) 4463 4464 4465 4466Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4463.008 kb on + strand, within PP_3955at 4463.008 kb on + strand, within PP_3955at 4463.008 kb on + strand, within PP_3955at 4463.009 kb on - strand, within PP_3955at 4463.040 kb on + strand, within PP_3955at 4463.040 kb on + strand, within PP_3955at 4463.040 kb on + strand, within PP_3955at 4463.040 kb on + strand, within PP_3955at 4463.041 kb on - strand, within PP_3955at 4463.041 kb on - strand, within PP_3955at 4463.041 kb on - strand, within PP_3955at 4463.041 kb on - strand, within PP_3955at 4463.041 kb on - strand, within PP_3955at 4463.122 kb on - strand, within PP_3955at 4463.269 kb on - strand, within PP_3955at 4463.269 kb on - strand, within PP_3955at 4463.269 kb on - strand, within PP_3955at 4463.316 kb on + strand, within PP_3955at 4463.316 kb on + strand, within PP_3955at 4463.316 kb on + strand, within PP_3955at 4463.316 kb on + strand, within PP_3955at 4463.317 kb on - strand, within PP_3955at 4463.317 kb on - strand, within PP_3955at 4463.317 kb on - strand, within PP_3955at 4463.317 kb on - strand, within PP_3955at 4463.317 kb on - strand, within PP_3955at 4463.317 kb on - strand, within PP_3955at 4463.437 kb on + strandat 4463.437 kb on + strandat 4463.502 kb on + strandat 4463.600 kb on - strand, within PP_3956at 4463.649 kb on - strand, within PP_3956at 4463.649 kb on - strand, within PP_3956at 4463.649 kb on - strand, within PP_3956at 4463.673 kb on + strand, within PP_3956at 4463.769 kb on + strand, within PP_3956at 4463.769 kb on + strand, within PP_3956at 4463.770 kb on - strand, within PP_3956at 4463.858 kb on + strand, within PP_3956at 4463.859 kb on - strand, within PP_3956at 4463.866 kb on - strand, within PP_3956at 4463.866 kb on - strand, within PP_3956at 4463.895 kb on + strand, within PP_3956at 4464.000 kb on + strandat 4464.000 kb on + strandat 4464.000 kb on + strandat 4464.000 kb on + strandat 4464.001 kb on - strandat 4464.001 kb on - strandat 4464.001 kb on - strandat 4464.018 kb on + strandat 4464.019 kb on - strandat 4464.019 kb on - strandat 4464.019 kb on - strandat 4464.115 kb on - strandat 4464.166 kb on + strandat 4464.167 kb on - strandat 4464.193 kb on - strand, within PP_3957at 4464.193 kb on - strand, within PP_3957at 4464.233 kb on + strand, within PP_3957at 4464.233 kb on + strand, within PP_3957at 4464.234 kb on - strand, within PP_3957at 4464.332 kb on - strand, within PP_3957at 4464.371 kb on - strand, within PP_3957at 4464.596 kb on + strand, within PP_3957at 4464.596 kb on + strand, within PP_3957at 4464.839 kb on - strand, within PP_3957at 4464.839 kb on - strand, within PP_3957at 4464.839 kb on - strand, within PP_3957at 4464.943 kb on + strand, within PP_3957at 4464.944 kb on - strand, within PP_3957at 4464.944 kb on - strand, within PP_3957at 4464.944 kb on - strand, within PP_3957at 4464.996 kb on + strandat 4465.035 kb on + strand, within PP_3957at 4465.035 kb on + strand, within PP_3957at 4465.035 kb on + strand, within PP_3957at 4465.035 kb on + strand, within PP_3957at 4465.036 kb on - strand, within PP_3957at 4465.036 kb on - strand, within PP_3957at 4465.058 kb on - strand, within PP_3957at 4465.078 kb on - strand, within PP_3957at 4465.094 kb on + strand, within PP_3957at 4465.094 kb on + strand, within PP_3957at 4465.094 kb on + strand, within PP_3957at 4465.094 kb on + strand, within PP_3957at 4465.094 kb on + strand, within PP_3957at 4465.094 kb on + strand, within PP_3957at 4465.095 kb on - strand, within PP_3957at 4465.095 kb on - strand, within PP_3957at 4465.095 kb on - strand, within PP_3957at 4465.095 kb on - strand, within PP_3957at 4465.098 kb on + strand, within PP_3957at 4465.098 kb on + strand, within PP_3957at 4465.098 kb on + strand, within PP_3957at 4465.098 kb on + strand, within PP_3957at 4465.098 kb on + strand, within PP_3957at 4465.099 kb on - strand, within PP_3957at 4465.099 kb on - strand, within PP_3957at 4465.099 kb on - strand, within PP_3957at 4465.120 kb on + strand, within PP_3957at 4465.120 kb on + strand, within PP_3957at 4465.121 kb on - strand, within PP_3957at 4465.121 kb on - strand, within PP_3957at 4465.121 kb on - strand, within PP_3957at 4465.192 kb on + strand, within PP_3957at 4465.320 kb on - strand, within PP_3957at 4465.392 kb on - strand, within PP_3957at 4465.393 kb on + strand, within PP_3957at 4465.394 kb on - strand, within PP_3957at 4465.394 kb on - strand, within PP_3957at 4465.402 kb on - strand, within PP_3957at 4465.402 kb on - strand, within PP_3957at 4465.426 kb on - strand, within PP_3957at 4465.473 kb on + strand, within PP_3957at 4465.500 kb on + strand, within PP_3957at 4465.500 kb on + strand, within PP_3957at 4465.500 kb on + strand, within PP_3957at 4465.500 kb on + strand, within PP_3957at 4465.500 kb on + strand, within PP_3957at 4465.500 kb on + strand, within PP_3957at 4465.501 kb on - strand, within PP_3957at 4465.501 kb on - strand, within PP_3957at 4465.501 kb on - strand, within PP_3957at 4465.501 kb on - strand, within PP_3957at 4465.715 kb on + strand, within PP_3957at 4465.715 kb on + strand, within PP_3957at 4465.715 kb on + strand, within PP_3957at 4465.775 kb on + strandat 4465.776 kb on - strandat 4465.776 kb on - strandat 4465.786 kb on + strandat 4465.788 kb on + strandat 4465.788 kb on + strandat 4465.788 kb on + strandat 4465.788 kb on + strandat 4465.788 kb on + strandat 4465.870 kb on - strandat 4465.892 kb on + strandat 4465.892 kb on + strandat 4465.905 kb on + strandat 4465.954 kb on + strandat 4466.011 kb on + strandat 4466.012 kb on - strandat 4466.012 kb on - strandat 4466.012 kb on - strandat 4466.021 kb on - strandat 4466.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
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4,463,008 + PP_3955 0.74 -2.8
4,463,008 + PP_3955 0.74 +0.5
4,463,008 + PP_3955 0.74 -0.1
4,463,009 - PP_3955 0.74 +0.6
4,463,040 + PP_3955 0.75 -0.1
4,463,040 + PP_3955 0.75 -0.0
4,463,040 + PP_3955 0.75 -0.3
4,463,040 + PP_3955 0.75 -0.1
4,463,041 - PP_3955 0.75 +0.1
4,463,041 - PP_3955 0.75 -3.2
4,463,041 - PP_3955 0.75 -0.2
4,463,041 - PP_3955 0.75 +1.5
4,463,041 - PP_3955 0.75 +0.5
4,463,122 - PP_3955 0.79 -0.4
4,463,269 - PP_3955 0.87 -0.2
4,463,269 - PP_3955 0.87 -0.3
4,463,269 - PP_3955 0.87 -0.4
4,463,316 + PP_3955 0.89 +0.4
4,463,316 + PP_3955 0.89 +1.1
4,463,316 + PP_3955 0.89 -1.1
4,463,316 + PP_3955 0.89 -0.6
4,463,317 - PP_3955 0.89 +0.4
4,463,317 - PP_3955 0.89 +0.6
4,463,317 - PP_3955 0.89 -1.5
4,463,317 - PP_3955 0.89 -0.2
4,463,317 - PP_3955 0.89 +0.9
4,463,317 - PP_3955 0.89 -2.1
4,463,437 + +0.9
4,463,437 + +0.8
4,463,502 + -1.6
4,463,600 - PP_3956 0.15 -2.2
4,463,649 - PP_3956 0.27 +0.1
4,463,649 - PP_3956 0.27 +0.8
4,463,649 - PP_3956 0.27 -2.2
4,463,673 + PP_3956 0.33 +0.2
4,463,769 + PP_3956 0.56 +0.8
4,463,769 + PP_3956 0.56 -0.5
4,463,770 - PP_3956 0.56 +0.9
4,463,858 + PP_3956 0.77 +0.5
4,463,859 - PP_3956 0.77 -3.9
4,463,866 - PP_3956 0.79 -0.8
4,463,866 - PP_3956 0.79 +1.0
4,463,895 + PP_3956 0.86 +1.0
4,464,000 + +1.3
4,464,000 + +2.0
4,464,000 + +0.8
4,464,000 + +0.7
4,464,001 - +0.9
4,464,001 - +1.9
4,464,001 - -0.1
4,464,018 + +0.3
4,464,019 - +0.5
4,464,019 - +2.2
4,464,019 - +2.5
4,464,115 - +1.1
4,464,166 + +1.1
4,464,167 - +2.6
4,464,193 - PP_3957 0.11 +1.6
4,464,193 - PP_3957 0.11 +1.0
4,464,233 + PP_3957 0.13 +1.2
4,464,233 + PP_3957 0.13 +0.9
4,464,234 - PP_3957 0.13 +2.1
4,464,332 - PP_3957 0.18 +0.9
4,464,371 - PP_3957 0.20 +1.0
4,464,596 + PP_3957 0.31 +1.2
4,464,596 + PP_3957 0.31 +2.1
4,464,839 - PP_3957 0.43 +2.1
4,464,839 - PP_3957 0.43 +2.5
4,464,839 - PP_3957 0.43 +1.6
4,464,943 + PP_3957 0.49 +0.9
4,464,944 - PP_3957 0.49 +0.3
4,464,944 - PP_3957 0.49 +0.9
4,464,944 - PP_3957 0.49 +1.3
4,464,996 + +0.3
4,465,035 + PP_3957 0.53 +2.7
4,465,035 + PP_3957 0.53 +1.0
4,465,035 + PP_3957 0.53 +2.3
4,465,035 + PP_3957 0.53 +2.0
4,465,036 - PP_3957 0.53 +1.6
4,465,036 - PP_3957 0.53 +1.8
4,465,058 - PP_3957 0.55 +2.0
4,465,078 - PP_3957 0.56 +0.0
4,465,094 + PP_3957 0.56 +1.7
4,465,094 + PP_3957 0.56 +1.2
4,465,094 + PP_3957 0.56 +1.6
4,465,094 + PP_3957 0.56 +1.2
4,465,094 + PP_3957 0.56 +1.2
4,465,094 + PP_3957 0.56 +2.1
4,465,095 - PP_3957 0.56 +1.9
4,465,095 - PP_3957 0.56 +0.6
4,465,095 - PP_3957 0.56 +1.5
4,465,095 - PP_3957 0.56 +0.4
4,465,098 + PP_3957 0.57 +1.2
4,465,098 + PP_3957 0.57 +1.2
4,465,098 + PP_3957 0.57 +1.7
4,465,098 + PP_3957 0.57 +1.2
4,465,098 + PP_3957 0.57 +1.7
4,465,099 - PP_3957 0.57 +2.2
4,465,099 - PP_3957 0.57 +0.8
4,465,099 - PP_3957 0.57 +0.3
4,465,120 + PP_3957 0.58 +1.4
4,465,120 + PP_3957 0.58 +1.4
4,465,121 - PP_3957 0.58 +1.2
4,465,121 - PP_3957 0.58 +1.6
4,465,121 - PP_3957 0.58 +2.4
4,465,192 + PP_3957 0.61 +1.4
4,465,320 - PP_3957 0.68 +0.7
4,465,392 - PP_3957 0.71 +0.6
4,465,393 + PP_3957 0.72 +1.4
4,465,394 - PP_3957 0.72 +1.7
4,465,394 - PP_3957 0.72 +2.7
4,465,402 - PP_3957 0.72 +1.5
4,465,402 - PP_3957 0.72 +2.3
4,465,426 - PP_3957 0.73 +1.8
4,465,473 + PP_3957 0.76 +1.8
4,465,500 + PP_3957 0.77 +1.7
4,465,500 + PP_3957 0.77 +1.3
4,465,500 + PP_3957 0.77 +0.6
4,465,500 + PP_3957 0.77 +1.4
4,465,500 + PP_3957 0.77 -0.1
4,465,500 + PP_3957 0.77 +1.3
4,465,501 - PP_3957 0.77 +1.9
4,465,501 - PP_3957 0.77 +1.6
4,465,501 - PP_3957 0.77 +0.5
4,465,501 - PP_3957 0.77 +1.8
4,465,715 + PP_3957 0.88 +2.0
4,465,715 + PP_3957 0.88 +1.2
4,465,715 + PP_3957 0.88 +2.0
4,465,775 + +1.1
4,465,776 - +1.4
4,465,776 - +1.5
4,465,786 + +1.3
4,465,788 + +1.2
4,465,788 + +2.4
4,465,788 + +1.6
4,465,788 + +1.2
4,465,788 + +1.3
4,465,870 - +1.3
4,465,892 + +2.0
4,465,892 + +0.2
4,465,905 + +1.6
4,465,954 + +2.5
4,466,011 + +2.0
4,466,012 - -0.2
4,466,012 - +0.8
4,466,012 - +0.1
4,466,021 - -1.5
4,466,168 - -0.2

Or see this region's nucleotide sequence