Strain Fitness in Pseudomonas putida KT2440 around PP_1798

Experiment: P. putida South MOI 0.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 0.1
2,019,071	-		PP_1797	0.26	-2.1
2,019,071	-		PP_1797	0.26	-0.4
2,019,126	+		PP_1797	0.30	-0.8
2,019,127	-		PP_1797	0.30	-1.5
2,019,136	+		PP_1797	0.31	-4.0
2,019,312	-		PP_1797	0.44	-2.2
2,019,439	+		PP_1797	0.54	-0.3
2,019,439	+		PP_1797	0.54	-2.9
2,019,440	-				+1.4
2,019,440	-		PP_1797	0.54	-2.3
2,019,674	-		PP_1797	0.71	-4.0
2,019,823	+		PP_1797	0.83	-1.4
2,019,824	-		PP_1797	0.83	-2.2
2,019,824	-		PP_1797	0.83	-2.3
2,019,878	+		PP_1797	0.87	-2.0
2,019,878	+		PP_1797	0.87	-3.8
2,019,878	+		PP_1797	0.87	-0.2
2,019,878	+		PP_1797	0.87	-4.4
2,019,878	+		PP_1797	0.87	-1.8
2,019,878	+		PP_1797	0.87	-2.0
2,019,879	-		PP_1797	0.87	-2.0
2,019,879	-		PP_1797	0.87	-1.5
2,019,881	+		PP_1797	0.87	-3.3
2,019,881	+		PP_1797	0.87	-3.8
2,019,881	+		PP_1797	0.87	-3.0
2,019,881	+		PP_1797	0.87	-1.5
2,019,881	+		PP_1797	0.87	-2.3
2,019,881	+		PP_1797	0.87	-1.4
2,019,998	+				-2.7
2,019,998	+				-4.6
2,020,110	+				-1.1
2,020,165	+				-1.4
2,020,165	+				-3.7
2,020,165	+				-2.3
2,020,166	-				-1.6
2,020,166	-				-2.6
2,020,189	+				-2.8
2,020,354	+		PP_1798	0.22	-4.4
2,020,354	+		PP_1798	0.22	-1.6
2,020,355	-		PP_1798	0.22	-3.3
2,020,355	-		PP_1798	0.22	-4.6
2,020,355	-		PP_1798	0.22	-2.8
2,020,357	-		PP_1798	0.22	-4.1
2,020,357	-		PP_1798	0.22	-0.2
2,020,357	-		PP_1798	0.22	-4.6
2,020,369	+		PP_1798	0.23	-3.3
2,020,397	-		PP_1798	0.25	-4.0
2,020,420	+		PP_1798	0.26	-1.8
2,020,485	+		PP_1798	0.31	-4.4
2,020,485	+		PP_1798	0.31	-3.4
2,020,486	-		PP_1798	0.31	-2.4
2,020,507	+		PP_1798	0.32	-4.0
2,020,508	-		PP_1798	0.32	-2.4
2,020,700	+		PP_1798	0.46	-2.8
2,020,760	+		PP_1798	0.50	-1.5
2,020,761	-		PP_1798	0.50	-2.5
2,020,894	-		PP_1798	0.60	-4.7
2,020,906	+		PP_1798	0.61	-1.6
2,020,922	+		PP_1798	0.62	-3.8
2,020,954	+		PP_1798	0.64	-3.4
2,020,954	+		PP_1798	0.64	-2.5
2,020,955	-		PP_1798	0.64	-3.3
2,020,955	-		PP_1798	0.64	-3.2
2,020,962	+		PP_1798	0.65	-3.0
2,020,962	+		PP_1798	0.65	-2.4
2,020,963	-		PP_1798	0.65	-2.7
2,020,987	+		PP_1798	0.66	-2.2
2,020,987	+		PP_1798	0.66	-2.5
2,020,987	+		PP_1798	0.66	-2.2
2,020,987	+		PP_1798	0.66	-3.2
2,020,988	-		PP_1798	0.66	-4.2
2,020,988	-		PP_1798	0.66	-4.3
2,021,020	+		PP_1798	0.69	-4.3
2,021,020	+		PP_1798	0.69	-0.5
2,021,021	-		PP_1798	0.69	-3.6
2,021,021	-		PP_1798	0.69	-4.0
2,021,059	+		PP_1798	0.71	-2.1
2,021,060	-		PP_1798	0.71	-3.6
2,021,060	-		PP_1798	0.71	-4.1
2,021,060	-		PP_1798	0.71	-2.6
2,021,060	-		PP_1798	0.71	-3.8
2,021,172	+		PP_1798	0.79	-1.8
2,021,262	+		PP_1798	0.86	-1.4
2,021,262	+		PP_1798	0.86	-4.6
2,021,262	+		PP_1798	0.86	-4.3
2,021,263	-		PP_1798	0.86	-2.4
2,021,263	-		PP_1798	0.86	-4.2
2,021,263	-		PP_1798	0.86	-4.9
2,021,263	-		PP_1798	0.86	-3.3
2,021,315	-		PP_1798	0.89	-2.3
2,021,315	-		PP_1798	0.89	-4.9
2,021,315	-		PP_1798	0.89	-3.2
2,021,323	-				-4.2
2,021,325	+				-1.8
2,021,325	+				-0.4
2,021,326	-				-0.8
2,021,326	-				-4.0
2,021,523	+				+0.5
2,021,634	+				+2.9
2,021,634	+				+3.4
2,021,635	-				-3.8
2,021,635	-				-3.8
2,021,635	-				-0.9
2,021,642	+				+1.5
2,021,643	-				-3.0
2,021,643	-				-2.2
2,021,658	+				-3.0
2,021,658	+				+0.6
2,021,658	+				+0.3
2,021,659	-				-2.2
2,021,659	-				-4.2
2,021,659	-				+1.4
2,021,695	+				+3.2
2,021,695	+				+2.4
2,021,696	-				-3.6
2,021,696	-				-3.8
2,021,696	-				-3.4
2,021,755	+				+2.8
2,021,818	+				-4.9
2,021,819	-				-3.0
2,021,832	+				+4.2
2,021,832	+				-4.8
2,021,832	+				-4.1
2,021,832	+				+2.4
2,021,832	+				-4.9
2,021,833	-				-3.3
2,021,833	-				-3.2
2,021,833	-				-2.8
2,021,833	-				-2.4
2,021,833	-				-2.3
2,021,833	-				-4.1
2,021,833	-				+1.4
2,021,836	+				+3.2
2,021,836	+				-4.0
2,021,836	+				-0.3
2,021,836	+				+2.2
2,021,836	+				+3.0
2,021,836	+				+3.7
2,021,836	+				-1.4
2,021,837	-				-4.6
2,021,837	-				-2.2
2,021,837	-				-4.0
2,021,837	-				-3.5
2,021,837	-				-3.3
2,021,837	-				-3.6
2,021,837	-				-3.0
2,021,837	-				-1.5
2,021,837	-				-3.0
2,021,837	-				-3.1
2,021,837	-				-1.8
2,021,838	+				-4.4
2,021,838	+				+0.2
2,021,838	+				+1.5
2,021,838	+				-2.7
2,021,838	+				-3.8
2,021,838	+				-1.6
2,021,838	+				-5.0
2,021,838	+				+2.5
2,021,839	-				-2.2
2,021,839	-				-3.5
2,021,839	-				-1.4
2,021,839	-				-3.7
2,021,839	-				-1.4
2,021,839	-				-3.5
2,021,839	-				-1.3
2,021,839	-				-0.6
2,021,851	-				-3.3
2,021,859	+				+3.1
2,021,859	+				+3.5
2,021,860	-				-2.8
2,021,860	-				-3.5
2,021,860	-				-2.3
2,021,860	-				-3.8
2,021,893	+				-3.2
2,021,894	-				-3.0
2,021,930	+				-3.0
2,021,930	+				-0.9
2,021,930	+				-1.6
2,021,931	-				-3.8
2,021,981	-				-2.7
2,022,010	+		PP_1799	0.10	-3.6
2,022,010	+		PP_1799	0.10	-3.0
2,022,010	+		PP_1799	0.10	-0.6
2,022,011	-		PP_1799	0.10	-4.6
2,022,011	-		PP_1799	0.10	-2.7
2,022,011	-		PP_1799	0.10	-3.5
2,022,019	+		PP_1799	0.11	-3.7
2,022,019	+		PP_1799	0.11	-1.4
2,022,028	+		PP_1799	0.12	-2.7
2,022,028	+		PP_1799	0.12	-1.9
2,022,028	+		PP_1799	0.12	-0.6
2,022,028	+		PP_1799	0.12	-3.6
2,022,028	+		PP_1799	0.12	-2.6
2,022,029	-		PP_1799	0.12	-1.8
2,022,029	-		PP_1799	0.12	-3.2
2,022,029	-		PP_1799	0.12	-3.3
2,022,036	+		PP_1799	0.13	-3.7
2,022,036	+		PP_1799	0.13	-1.7
2,022,049	-		PP_1799	0.14	-3.4
2,022,049	-		PP_1799	0.14	-1.3
2,022,072	-		PP_1799	0.16	-2.3
2,022,072	-		PP_1799	0.16	-1.0
2,022,072	-		PP_1799	0.16	-3.1
2,022,109	+		PP_1799	0.19	-2.6
2,022,109	+		PP_1799	0.19	-3.6
2,022,110	-		PP_1799	0.19	+1.4
2,022,170	+				+1.4
2,022,170	+		PP_1799	0.25	-3.1
2,022,171	-		PP_1799	0.25	-2.8
2,022,171	-		PP_1799	0.25	-3.4
2,022,172	+		PP_1799	0.25	-2.4
2,022,172	+		PP_1799	0.25	-3.7
2,022,172	+		PP_1799	0.25	-2.3
2,022,172	+		PP_1799	0.25	-2.8
2,022,172	+		PP_1799	0.25	-1.6
2,022,173	-		PP_1799	0.25	-1.9
2,022,173	-		PP_1799	0.25	-0.8
2,022,173	-		PP_1799	0.25	-3.2
2,022,173	-		PP_1799	0.25	+1.4
2,022,173	-		PP_1799	0.25	-2.3
2,022,173	-		PP_1799	0.25	-2.2
2,022,173	-		PP_1799	0.25	-3.7
2,022,301	+		PP_1799	0.37	-3.2
2,022,301	+		PP_1799	0.37	-1.8
2,022,301	+		PP_1799	0.37	-3.6
2,022,301	+		PP_1799	0.37	-3.2
2,022,302	-		PP_1799	0.37	-3.2
2,022,360	+		PP_1799	0.43	-2.9
2,022,385	+		PP_1799	0.45	-1.4
2,022,386	-		PP_1799	0.45	-3.1
2,022,403	+		PP_1799	0.47	-1.0
2,022,404	-		PP_1799	0.47	-3.1
2,022,427	+		PP_1799	0.49	-2.7
2,022,440	-		PP_1799	0.50	-2.9
2,022,462	+		PP_1799	0.52	-1.0
2,022,462	+		PP_1799	0.52	-3.4