Strain Fitness in Pseudomonas putida KT2440 around PP_1798

Experiment: P. putida South MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1797 and PP_1798 overlap by 4 nucleotidesPP_1798 and PP_1799 are separated by 438 nucleotides PP_1797: PP_1797 - HlyD family secretion protein, at 2,018,726 to 2,020,051 _1797 PP_1798: PP_1798 - Outer membrane efflux protein, at 2,020,048 to 2,021,463 _1798 PP_1799: PP_1799 - GDP-mannose 4,6-dehydratase, at 2,021,902 to 2,022,969 _1799 Position (kb) 2020 2021 2022Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 2019.071 kb on - strand, within PP_1797at 2019.071 kb on - strand, within PP_1797at 2019.126 kb on + strand, within PP_1797at 2019.127 kb on - strand, within PP_1797at 2019.136 kb on + strand, within PP_1797at 2019.312 kb on - strand, within PP_1797at 2019.439 kb on + strand, within PP_1797at 2019.439 kb on + strand, within PP_1797at 2019.440 kb on - strandat 2019.440 kb on - strand, within PP_1797at 2019.674 kb on - strand, within PP_1797at 2019.823 kb on + strand, within PP_1797at 2019.824 kb on - strand, within PP_1797at 2019.824 kb on - strand, within PP_1797at 2019.878 kb on + strand, within PP_1797at 2019.878 kb on + strand, within PP_1797at 2019.878 kb on + strand, within PP_1797at 2019.878 kb on + strand, within PP_1797at 2019.878 kb on + strand, within PP_1797at 2019.878 kb on + strand, within PP_1797at 2019.879 kb on - strand, within PP_1797at 2019.879 kb on - strand, within PP_1797at 2019.881 kb on + strand, within PP_1797at 2019.881 kb on + strand, within PP_1797at 2019.881 kb on + strand, within PP_1797at 2019.881 kb on + strand, within PP_1797at 2019.881 kb on + strand, within PP_1797at 2019.881 kb on + strand, within PP_1797at 2019.998 kb on + strandat 2019.998 kb on + strandat 2020.110 kb on + strandat 2020.165 kb on + strandat 2020.165 kb on + strandat 2020.165 kb on + strandat 2020.166 kb on - strandat 2020.166 kb on - strandat 2020.189 kb on + strandat 2020.354 kb on + strand, within PP_1798at 2020.354 kb on + strand, within PP_1798at 2020.355 kb on - strand, within PP_1798at 2020.355 kb on - strand, within PP_1798at 2020.355 kb on - strand, within PP_1798at 2020.357 kb on - strand, within PP_1798at 2020.357 kb on - strand, within PP_1798at 2020.357 kb on - strand, within PP_1798at 2020.369 kb on + strand, within PP_1798at 2020.397 kb on - strand, within PP_1798at 2020.420 kb on + strand, within PP_1798at 2020.485 kb on + strand, within PP_1798at 2020.485 kb on + strand, within PP_1798at 2020.486 kb on - strand, within PP_1798at 2020.507 kb on + strand, within PP_1798at 2020.508 kb on - strand, within PP_1798at 2020.700 kb on + strand, within PP_1798at 2020.760 kb on + strand, within PP_1798at 2020.761 kb on - strand, within PP_1798at 2020.894 kb on - strand, within PP_1798at 2020.906 kb on + strand, within PP_1798at 2020.922 kb on + strand, within PP_1798at 2020.954 kb on + strand, within PP_1798at 2020.954 kb on + strand, within PP_1798at 2020.955 kb on - strand, within PP_1798at 2020.955 kb on - strand, within PP_1798at 2020.962 kb on + strand, within PP_1798at 2020.962 kb on + strand, within PP_1798at 2020.963 kb on - strand, within PP_1798at 2020.987 kb on + strand, within PP_1798at 2020.987 kb on + strand, within PP_1798at 2020.987 kb on + strand, within PP_1798at 2020.987 kb on + strand, within PP_1798at 2020.988 kb on - strand, within PP_1798at 2020.988 kb on - strand, within PP_1798at 2021.020 kb on + strand, within PP_1798at 2021.020 kb on + strand, within PP_1798at 2021.021 kb on - strand, within PP_1798at 2021.021 kb on - strand, within PP_1798at 2021.059 kb on + strand, within PP_1798at 2021.060 kb on - strand, within PP_1798at 2021.060 kb on - strand, within PP_1798at 2021.060 kb on - strand, within PP_1798at 2021.060 kb on - strand, within PP_1798at 2021.172 kb on + strand, within PP_1798at 2021.262 kb on + strand, within PP_1798at 2021.262 kb on + strand, within PP_1798at 2021.262 kb on + strand, within PP_1798at 2021.263 kb on - strand, within PP_1798at 2021.263 kb on - strand, within PP_1798at 2021.263 kb on - strand, within PP_1798at 2021.263 kb on - strand, within PP_1798at 2021.315 kb on - strand, within PP_1798at 2021.315 kb on - strand, within PP_1798at 2021.315 kb on - strand, within PP_1798at 2021.323 kb on - strandat 2021.325 kb on + strandat 2021.325 kb on + strandat 2021.326 kb on - strandat 2021.326 kb on - strandat 2021.523 kb on + strandat 2021.634 kb on + strandat 2021.634 kb on + strandat 2021.635 kb on - strandat 2021.635 kb on - strandat 2021.635 kb on - strandat 2021.642 kb on + strandat 2021.643 kb on - strandat 2021.643 kb on - strandat 2021.658 kb on + strandat 2021.658 kb on + strandat 2021.658 kb on + strandat 2021.659 kb on - strandat 2021.659 kb on - strandat 2021.659 kb on - strandat 2021.695 kb on + strandat 2021.695 kb on + strandat 2021.696 kb on - strandat 2021.696 kb on - strandat 2021.696 kb on - strandat 2021.755 kb on + strandat 2021.818 kb on + strandat 2021.819 kb on - strandat 2021.832 kb on + strandat 2021.832 kb on + strandat 2021.832 kb on + strandat 2021.832 kb on + strandat 2021.832 kb on + strandat 2021.833 kb on - strandat 2021.833 kb on - strandat 2021.833 kb on - strandat 2021.833 kb on - strandat 2021.833 kb on - strandat 2021.833 kb on - strandat 2021.833 kb on - strandat 2021.836 kb on + strandat 2021.836 kb on + strandat 2021.836 kb on + strandat 2021.836 kb on + strandat 2021.836 kb on + strandat 2021.836 kb on + strandat 2021.836 kb on + strandat 2021.837 kb on - strandat 2021.837 kb on - strandat 2021.837 kb on - strandat 2021.837 kb on - strandat 2021.837 kb on - strandat 2021.837 kb on - strandat 2021.837 kb on - strandat 2021.837 kb on - strandat 2021.837 kb on - strandat 2021.837 kb on - strandat 2021.837 kb on - strandat 2021.838 kb on + strandat 2021.838 kb on + strandat 2021.838 kb on + strandat 2021.838 kb on + strandat 2021.838 kb on + strandat 2021.838 kb on + strandat 2021.838 kb on + strandat 2021.838 kb on + strandat 2021.839 kb on - strandat 2021.839 kb on - strandat 2021.839 kb on - strandat 2021.839 kb on - strandat 2021.839 kb on - strandat 2021.839 kb on - strandat 2021.839 kb on - strandat 2021.839 kb on - strandat 2021.851 kb on - strandat 2021.859 kb on + strandat 2021.859 kb on + strandat 2021.860 kb on - strandat 2021.860 kb on - strandat 2021.860 kb on - strandat 2021.860 kb on - strandat 2021.893 kb on + strandat 2021.894 kb on - strandat 2021.930 kb on + strandat 2021.930 kb on + strandat 2021.930 kb on + strandat 2021.931 kb on - strandat 2021.981 kb on - strandat 2022.010 kb on + strand, within PP_1799at 2022.010 kb on + strand, within PP_1799at 2022.010 kb on + strand, within PP_1799at 2022.011 kb on - strand, within PP_1799at 2022.011 kb on - strand, within PP_1799at 2022.011 kb on - strand, within PP_1799at 2022.019 kb on + strand, within PP_1799at 2022.019 kb on + strand, within PP_1799at 2022.028 kb on + strand, within PP_1799at 2022.028 kb on + strand, within PP_1799at 2022.028 kb on + strand, within PP_1799at 2022.028 kb on + strand, within PP_1799at 2022.028 kb on + strand, within PP_1799at 2022.029 kb on - strand, within PP_1799at 2022.029 kb on - strand, within PP_1799at 2022.029 kb on - strand, within PP_1799at 2022.036 kb on + strand, within PP_1799at 2022.036 kb on + strand, within PP_1799at 2022.049 kb on - strand, within PP_1799at 2022.049 kb on - strand, within PP_1799at 2022.072 kb on - strand, within PP_1799at 2022.072 kb on - strand, within PP_1799at 2022.072 kb on - strand, within PP_1799at 2022.109 kb on + strand, within PP_1799at 2022.109 kb on + strand, within PP_1799at 2022.110 kb on - strand, within PP_1799at 2022.170 kb on + strandat 2022.170 kb on + strand, within PP_1799at 2022.171 kb on - strand, within PP_1799at 2022.171 kb on - strand, within PP_1799at 2022.172 kb on + strand, within PP_1799at 2022.172 kb on + strand, within PP_1799at 2022.172 kb on + strand, within PP_1799at 2022.172 kb on + strand, within PP_1799at 2022.172 kb on + strand, within PP_1799at 2022.173 kb on - strand, within PP_1799at 2022.173 kb on - strand, within PP_1799at 2022.173 kb on - strand, within PP_1799at 2022.173 kb on - strand, within PP_1799at 2022.173 kb on - strand, within PP_1799at 2022.173 kb on - strand, within PP_1799at 2022.173 kb on - strand, within PP_1799at 2022.301 kb on + strand, within PP_1799at 2022.301 kb on + strand, within PP_1799at 2022.301 kb on + strand, within PP_1799at 2022.301 kb on + strand, within PP_1799at 2022.302 kb on - strand, within PP_1799at 2022.360 kb on + strand, within PP_1799at 2022.385 kb on + strand, within PP_1799at 2022.386 kb on - strand, within PP_1799at 2022.403 kb on + strand, within PP_1799at 2022.404 kb on - strand, within PP_1799at 2022.427 kb on + strand, within PP_1799at 2022.440 kb on - strand, within PP_1799at 2022.462 kb on + strand, within PP_1799at 2022.462 kb on + strand, within PP_1799

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
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2,019,071 - PP_1797 0.26 -2.1
2,019,071 - PP_1797 0.26 -0.4
2,019,126 + PP_1797 0.30 -0.8
2,019,127 - PP_1797 0.30 -1.5
2,019,136 + PP_1797 0.31 -4.0
2,019,312 - PP_1797 0.44 -2.2
2,019,439 + PP_1797 0.54 -0.3
2,019,439 + PP_1797 0.54 -2.9
2,019,440 - +1.4
2,019,440 - PP_1797 0.54 -2.3
2,019,674 - PP_1797 0.71 -4.0
2,019,823 + PP_1797 0.83 -1.4
2,019,824 - PP_1797 0.83 -2.2
2,019,824 - PP_1797 0.83 -2.3
2,019,878 + PP_1797 0.87 -2.0
2,019,878 + PP_1797 0.87 -3.8
2,019,878 + PP_1797 0.87 -0.2
2,019,878 + PP_1797 0.87 -4.4
2,019,878 + PP_1797 0.87 -1.8
2,019,878 + PP_1797 0.87 -2.0
2,019,879 - PP_1797 0.87 -2.0
2,019,879 - PP_1797 0.87 -1.5
2,019,881 + PP_1797 0.87 -3.3
2,019,881 + PP_1797 0.87 -3.8
2,019,881 + PP_1797 0.87 -3.0
2,019,881 + PP_1797 0.87 -1.5
2,019,881 + PP_1797 0.87 -2.3
2,019,881 + PP_1797 0.87 -1.4
2,019,998 + -2.7
2,019,998 + -4.6
2,020,110 + -1.1
2,020,165 + -1.4
2,020,165 + -3.7
2,020,165 + -2.3
2,020,166 - -1.6
2,020,166 - -2.6
2,020,189 + -2.8
2,020,354 + PP_1798 0.22 -4.4
2,020,354 + PP_1798 0.22 -1.6
2,020,355 - PP_1798 0.22 -3.3
2,020,355 - PP_1798 0.22 -4.6
2,020,355 - PP_1798 0.22 -2.8
2,020,357 - PP_1798 0.22 -4.1
2,020,357 - PP_1798 0.22 -0.2
2,020,357 - PP_1798 0.22 -4.6
2,020,369 + PP_1798 0.23 -3.3
2,020,397 - PP_1798 0.25 -4.0
2,020,420 + PP_1798 0.26 -1.8
2,020,485 + PP_1798 0.31 -4.4
2,020,485 + PP_1798 0.31 -3.4
2,020,486 - PP_1798 0.31 -2.4
2,020,507 + PP_1798 0.32 -4.0
2,020,508 - PP_1798 0.32 -2.4
2,020,700 + PP_1798 0.46 -2.8
2,020,760 + PP_1798 0.50 -1.5
2,020,761 - PP_1798 0.50 -2.5
2,020,894 - PP_1798 0.60 -4.7
2,020,906 + PP_1798 0.61 -1.6
2,020,922 + PP_1798 0.62 -3.8
2,020,954 + PP_1798 0.64 -3.4
2,020,954 + PP_1798 0.64 -2.5
2,020,955 - PP_1798 0.64 -3.3
2,020,955 - PP_1798 0.64 -3.2
2,020,962 + PP_1798 0.65 -3.0
2,020,962 + PP_1798 0.65 -2.4
2,020,963 - PP_1798 0.65 -2.7
2,020,987 + PP_1798 0.66 -2.2
2,020,987 + PP_1798 0.66 -2.5
2,020,987 + PP_1798 0.66 -2.2
2,020,987 + PP_1798 0.66 -3.2
2,020,988 - PP_1798 0.66 -4.2
2,020,988 - PP_1798 0.66 -4.3
2,021,020 + PP_1798 0.69 -4.3
2,021,020 + PP_1798 0.69 -0.5
2,021,021 - PP_1798 0.69 -3.6
2,021,021 - PP_1798 0.69 -4.0
2,021,059 + PP_1798 0.71 -2.1
2,021,060 - PP_1798 0.71 -3.6
2,021,060 - PP_1798 0.71 -4.1
2,021,060 - PP_1798 0.71 -2.6
2,021,060 - PP_1798 0.71 -3.8
2,021,172 + PP_1798 0.79 -1.8
2,021,262 + PP_1798 0.86 -1.4
2,021,262 + PP_1798 0.86 -4.6
2,021,262 + PP_1798 0.86 -4.3
2,021,263 - PP_1798 0.86 -2.4
2,021,263 - PP_1798 0.86 -4.2
2,021,263 - PP_1798 0.86 -4.9
2,021,263 - PP_1798 0.86 -3.3
2,021,315 - PP_1798 0.89 -2.3
2,021,315 - PP_1798 0.89 -4.9
2,021,315 - PP_1798 0.89 -3.2
2,021,323 - -4.2
2,021,325 + -1.8
2,021,325 + -0.4
2,021,326 - -0.8
2,021,326 - -4.0
2,021,523 + +0.5
2,021,634 + +2.9
2,021,634 + +3.4
2,021,635 - -3.8
2,021,635 - -3.8
2,021,635 - -0.9
2,021,642 + +1.5
2,021,643 - -3.0
2,021,643 - -2.2
2,021,658 + -3.0
2,021,658 + +0.6
2,021,658 + +0.3
2,021,659 - -2.2
2,021,659 - -4.2
2,021,659 - +1.4
2,021,695 + +3.2
2,021,695 + +2.4
2,021,696 - -3.6
2,021,696 - -3.8
2,021,696 - -3.4
2,021,755 + +2.8
2,021,818 + -4.9
2,021,819 - -3.0
2,021,832 + +4.2
2,021,832 + -4.8
2,021,832 + -4.1
2,021,832 + +2.4
2,021,832 + -4.9
2,021,833 - -3.3
2,021,833 - -3.2
2,021,833 - -2.8
2,021,833 - -2.4
2,021,833 - -2.3
2,021,833 - -4.1
2,021,833 - +1.4
2,021,836 + +3.2
2,021,836 + -4.0
2,021,836 + -0.3
2,021,836 + +2.2
2,021,836 + +3.0
2,021,836 + +3.7
2,021,836 + -1.4
2,021,837 - -4.6
2,021,837 - -2.2
2,021,837 - -4.0
2,021,837 - -3.5
2,021,837 - -3.3
2,021,837 - -3.6
2,021,837 - -3.0
2,021,837 - -1.5
2,021,837 - -3.0
2,021,837 - -3.1
2,021,837 - -1.8
2,021,838 + -4.4
2,021,838 + +0.2
2,021,838 + +1.5
2,021,838 + -2.7
2,021,838 + -3.8
2,021,838 + -1.6
2,021,838 + -5.0
2,021,838 + +2.5
2,021,839 - -2.2
2,021,839 - -3.5
2,021,839 - -1.4
2,021,839 - -3.7
2,021,839 - -1.4
2,021,839 - -3.5
2,021,839 - -1.3
2,021,839 - -0.6
2,021,851 - -3.3
2,021,859 + +3.1
2,021,859 + +3.5
2,021,860 - -2.8
2,021,860 - -3.5
2,021,860 - -2.3
2,021,860 - -3.8
2,021,893 + -3.2
2,021,894 - -3.0
2,021,930 + -3.0
2,021,930 + -0.9
2,021,930 + -1.6
2,021,931 - -3.8
2,021,981 - -2.7
2,022,010 + PP_1799 0.10 -3.6
2,022,010 + PP_1799 0.10 -3.0
2,022,010 + PP_1799 0.10 -0.6
2,022,011 - PP_1799 0.10 -4.6
2,022,011 - PP_1799 0.10 -2.7
2,022,011 - PP_1799 0.10 -3.5
2,022,019 + PP_1799 0.11 -3.7
2,022,019 + PP_1799 0.11 -1.4
2,022,028 + PP_1799 0.12 -2.7
2,022,028 + PP_1799 0.12 -1.9
2,022,028 + PP_1799 0.12 -0.6
2,022,028 + PP_1799 0.12 -3.6
2,022,028 + PP_1799 0.12 -2.6
2,022,029 - PP_1799 0.12 -1.8
2,022,029 - PP_1799 0.12 -3.2
2,022,029 - PP_1799 0.12 -3.3
2,022,036 + PP_1799 0.13 -3.7
2,022,036 + PP_1799 0.13 -1.7
2,022,049 - PP_1799 0.14 -3.4
2,022,049 - PP_1799 0.14 -1.3
2,022,072 - PP_1799 0.16 -2.3
2,022,072 - PP_1799 0.16 -1.0
2,022,072 - PP_1799 0.16 -3.1
2,022,109 + PP_1799 0.19 -2.6
2,022,109 + PP_1799 0.19 -3.6
2,022,110 - PP_1799 0.19 +1.4
2,022,170 + +1.4
2,022,170 + PP_1799 0.25 -3.1
2,022,171 - PP_1799 0.25 -2.8
2,022,171 - PP_1799 0.25 -3.4
2,022,172 + PP_1799 0.25 -2.4
2,022,172 + PP_1799 0.25 -3.7
2,022,172 + PP_1799 0.25 -2.3
2,022,172 + PP_1799 0.25 -2.8
2,022,172 + PP_1799 0.25 -1.6
2,022,173 - PP_1799 0.25 -1.9
2,022,173 - PP_1799 0.25 -0.8
2,022,173 - PP_1799 0.25 -3.2
2,022,173 - PP_1799 0.25 +1.4
2,022,173 - PP_1799 0.25 -2.3
2,022,173 - PP_1799 0.25 -2.2
2,022,173 - PP_1799 0.25 -3.7
2,022,301 + PP_1799 0.37 -3.2
2,022,301 + PP_1799 0.37 -1.8
2,022,301 + PP_1799 0.37 -3.6
2,022,301 + PP_1799 0.37 -3.2
2,022,302 - PP_1799 0.37 -3.2
2,022,360 + PP_1799 0.43 -2.9
2,022,385 + PP_1799 0.45 -1.4
2,022,386 - PP_1799 0.45 -3.1
2,022,403 + PP_1799 0.47 -1.0
2,022,404 - PP_1799 0.47 -3.1
2,022,427 + PP_1799 0.49 -2.7
2,022,440 - PP_1799 0.50 -2.9
2,022,462 + PP_1799 0.52 -1.0
2,022,462 + PP_1799 0.52 -3.4

Or see this region's nucleotide sequence