Strain Fitness in Pseudomonas putida KT2440 around PP_1797

Experiment: P. putida South MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1797 and PP_1798 overlap by 4 nucleotides PP_1797: PP_1797 - HlyD family secretion protein, at 2,018,726 to 2,020,051 _1797 PP_1798: PP_1798 - Outer membrane efflux protein, at 2,020,048 to 2,021,463 _1798 Position (kb) 2018 2019 2020 2021Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2017.832 kb on + strandat 2017.833 kb on - strandat 2017.833 kb on - strandat 2017.846 kb on + strandat 2017.846 kb on + strandat 2017.847 kb on - strandat 2017.867 kb on + strandat 2017.867 kb on + strandat 2017.868 kb on - strandat 2017.882 kb on + strandat 2017.882 kb on + strandat 2017.882 kb on + strandat 2017.882 kb on + strandat 2017.882 kb on + strandat 2017.882 kb on + strandat 2017.883 kb on - strandat 2017.929 kb on + strandat 2017.930 kb on - strandat 2017.966 kb on + strandat 2017.966 kb on + strandat 2017.966 kb on + strandat 2017.966 kb on + strandat 2017.966 kb on + strandat 2017.967 kb on - strandat 2017.967 kb on - strandat 2017.967 kb on - strandat 2017.967 kb on - strandat 2017.967 kb on - strandat 2017.967 kb on - strandat 2018.030 kb on - strandat 2018.085 kb on + strandat 2018.085 kb on + strandat 2018.086 kb on - strandat 2018.086 kb on - strandat 2018.086 kb on - strandat 2018.104 kb on + strandat 2018.104 kb on + strandat 2018.104 kb on + strandat 2018.104 kb on + strandat 2018.105 kb on - strandat 2018.105 kb on - strandat 2018.105 kb on - strandat 2018.105 kb on - strandat 2018.105 kb on - strandat 2018.107 kb on - strandat 2018.107 kb on - strandat 2018.107 kb on - strandat 2018.107 kb on - strandat 2018.138 kb on + strandat 2018.139 kb on - strandat 2018.367 kb on - strandat 2018.367 kb on - strandat 2018.384 kb on - strandat 2018.558 kb on + strandat 2018.559 kb on - strandat 2018.559 kb on - strandat 2018.702 kb on - strandat 2018.723 kb on + strandat 2018.724 kb on - strandat 2018.734 kb on + strandat 2018.735 kb on - strandat 2018.746 kb on + strandat 2018.746 kb on + strandat 2018.746 kb on + strandat 2019.032 kb on + strand, within PP_1797at 2019.033 kb on - strand, within PP_1797at 2019.071 kb on - strand, within PP_1797at 2019.071 kb on - strand, within PP_1797at 2019.126 kb on + strand, within PP_1797at 2019.127 kb on - strand, within PP_1797at 2019.136 kb on + strand, within PP_1797at 2019.312 kb on - strand, within PP_1797at 2019.439 kb on + strand, within PP_1797at 2019.439 kb on + strand, within PP_1797at 2019.440 kb on - strandat 2019.440 kb on - strand, within PP_1797at 2019.674 kb on - strand, within PP_1797at 2019.823 kb on + strand, within PP_1797at 2019.824 kb on - strand, within PP_1797at 2019.824 kb on - strand, within PP_1797at 2019.878 kb on + strand, within PP_1797at 2019.878 kb on + strand, within PP_1797at 2019.878 kb on + strand, within PP_1797at 2019.878 kb on + strand, within PP_1797at 2019.878 kb on + strand, within PP_1797at 2019.878 kb on + strand, within PP_1797at 2019.879 kb on - strand, within PP_1797at 2019.879 kb on - strand, within PP_1797at 2019.881 kb on + strand, within PP_1797at 2019.881 kb on + strand, within PP_1797at 2019.881 kb on + strand, within PP_1797at 2019.881 kb on + strand, within PP_1797at 2019.881 kb on + strand, within PP_1797at 2019.881 kb on + strand, within PP_1797at 2019.998 kb on + strandat 2019.998 kb on + strandat 2020.110 kb on + strandat 2020.165 kb on + strandat 2020.165 kb on + strandat 2020.165 kb on + strandat 2020.166 kb on - strandat 2020.166 kb on - strandat 2020.189 kb on + strandat 2020.354 kb on + strand, within PP_1798at 2020.354 kb on + strand, within PP_1798at 2020.355 kb on - strand, within PP_1798at 2020.355 kb on - strand, within PP_1798at 2020.355 kb on - strand, within PP_1798at 2020.357 kb on - strand, within PP_1798at 2020.357 kb on - strand, within PP_1798at 2020.357 kb on - strand, within PP_1798at 2020.369 kb on + strand, within PP_1798at 2020.397 kb on - strand, within PP_1798at 2020.420 kb on + strand, within PP_1798at 2020.485 kb on + strand, within PP_1798at 2020.485 kb on + strand, within PP_1798at 2020.486 kb on - strand, within PP_1798at 2020.507 kb on + strand, within PP_1798at 2020.508 kb on - strand, within PP_1798at 2020.700 kb on + strand, within PP_1798at 2020.760 kb on + strand, within PP_1798at 2020.761 kb on - strand, within PP_1798at 2020.894 kb on - strand, within PP_1798at 2020.906 kb on + strand, within PP_1798at 2020.922 kb on + strand, within PP_1798at 2020.954 kb on + strand, within PP_1798at 2020.954 kb on + strand, within PP_1798at 2020.955 kb on - strand, within PP_1798at 2020.955 kb on - strand, within PP_1798at 2020.962 kb on + strand, within PP_1798at 2020.962 kb on + strand, within PP_1798at 2020.963 kb on - strand, within PP_1798at 2020.987 kb on + strand, within PP_1798at 2020.987 kb on + strand, within PP_1798at 2020.987 kb on + strand, within PP_1798at 2020.987 kb on + strand, within PP_1798at 2020.988 kb on - strand, within PP_1798at 2020.988 kb on - strand, within PP_1798at 2021.020 kb on + strand, within PP_1798at 2021.020 kb on + strand, within PP_1798at 2021.021 kb on - strand, within PP_1798at 2021.021 kb on - strand, within PP_1798

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
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2,017,832 + -1.1
2,017,833 - +0.8
2,017,833 - +0.4
2,017,846 + -3.2
2,017,846 + -1.5
2,017,847 - -0.5
2,017,867 + -0.8
2,017,867 + -1.7
2,017,868 - +0.4
2,017,882 + -0.6
2,017,882 + -0.5
2,017,882 + -0.1
2,017,882 + +0.5
2,017,882 + +0.4
2,017,882 + +1.0
2,017,883 - +1.7
2,017,929 + +0.5
2,017,930 - +0.9
2,017,966 + +2.1
2,017,966 + +0.3
2,017,966 + -1.4
2,017,966 + -1.0
2,017,966 + -0.5
2,017,967 - +0.3
2,017,967 - +0.0
2,017,967 - +0.6
2,017,967 - +0.6
2,017,967 - +0.2
2,017,967 - -0.2
2,018,030 - +0.0
2,018,085 + -0.8
2,018,085 + -0.8
2,018,086 - -0.0
2,018,086 - +0.6
2,018,086 - -0.2
2,018,104 + -0.9
2,018,104 + -2.7
2,018,104 + -0.8
2,018,104 + -1.1
2,018,105 - +0.2
2,018,105 - -0.8
2,018,105 - -1.4
2,018,105 - -0.8
2,018,105 - -2.3
2,018,107 - +0.8
2,018,107 - +0.3
2,018,107 - -0.7
2,018,107 - -1.0
2,018,138 + -2.9
2,018,139 - +0.8
2,018,367 - +0.2
2,018,367 - -0.5
2,018,384 - -1.9
2,018,558 + -0.1
2,018,559 - -0.6
2,018,559 - +1.7
2,018,702 - -0.3
2,018,723 + -1.5
2,018,724 - -0.1
2,018,734 + -1.3
2,018,735 - +0.1
2,018,746 + -0.8
2,018,746 + -1.6
2,018,746 + -0.2
2,019,032 + PP_1797 0.23 -1.6
2,019,033 - PP_1797 0.23 +0.2
2,019,071 - PP_1797 0.26 -2.1
2,019,071 - PP_1797 0.26 -0.4
2,019,126 + PP_1797 0.30 -0.8
2,019,127 - PP_1797 0.30 -1.5
2,019,136 + PP_1797 0.31 -4.0
2,019,312 - PP_1797 0.44 -2.2
2,019,439 + PP_1797 0.54 -0.3
2,019,439 + PP_1797 0.54 -2.9
2,019,440 - +1.4
2,019,440 - PP_1797 0.54 -2.3
2,019,674 - PP_1797 0.71 -4.0
2,019,823 + PP_1797 0.83 -1.4
2,019,824 - PP_1797 0.83 -2.2
2,019,824 - PP_1797 0.83 -2.3
2,019,878 + PP_1797 0.87 -2.0
2,019,878 + PP_1797 0.87 -3.8
2,019,878 + PP_1797 0.87 -0.2
2,019,878 + PP_1797 0.87 -4.4
2,019,878 + PP_1797 0.87 -1.8
2,019,878 + PP_1797 0.87 -2.0
2,019,879 - PP_1797 0.87 -2.0
2,019,879 - PP_1797 0.87 -1.5
2,019,881 + PP_1797 0.87 -3.3
2,019,881 + PP_1797 0.87 -3.8
2,019,881 + PP_1797 0.87 -3.0
2,019,881 + PP_1797 0.87 -1.5
2,019,881 + PP_1797 0.87 -2.3
2,019,881 + PP_1797 0.87 -1.4
2,019,998 + -2.7
2,019,998 + -4.6
2,020,110 + -1.1
2,020,165 + -1.4
2,020,165 + -3.7
2,020,165 + -2.3
2,020,166 - -1.6
2,020,166 - -2.6
2,020,189 + -2.8
2,020,354 + PP_1798 0.22 -4.4
2,020,354 + PP_1798 0.22 -1.6
2,020,355 - PP_1798 0.22 -3.3
2,020,355 - PP_1798 0.22 -4.6
2,020,355 - PP_1798 0.22 -2.8
2,020,357 - PP_1798 0.22 -4.1
2,020,357 - PP_1798 0.22 -0.2
2,020,357 - PP_1798 0.22 -4.6
2,020,369 + PP_1798 0.23 -3.3
2,020,397 - PP_1798 0.25 -4.0
2,020,420 + PP_1798 0.26 -1.8
2,020,485 + PP_1798 0.31 -4.4
2,020,485 + PP_1798 0.31 -3.4
2,020,486 - PP_1798 0.31 -2.4
2,020,507 + PP_1798 0.32 -4.0
2,020,508 - PP_1798 0.32 -2.4
2,020,700 + PP_1798 0.46 -2.8
2,020,760 + PP_1798 0.50 -1.5
2,020,761 - PP_1798 0.50 -2.5
2,020,894 - PP_1798 0.60 -4.7
2,020,906 + PP_1798 0.61 -1.6
2,020,922 + PP_1798 0.62 -3.8
2,020,954 + PP_1798 0.64 -3.4
2,020,954 + PP_1798 0.64 -2.5
2,020,955 - PP_1798 0.64 -3.3
2,020,955 - PP_1798 0.64 -3.2
2,020,962 + PP_1798 0.65 -3.0
2,020,962 + PP_1798 0.65 -2.4
2,020,963 - PP_1798 0.65 -2.7
2,020,987 + PP_1798 0.66 -2.2
2,020,987 + PP_1798 0.66 -2.5
2,020,987 + PP_1798 0.66 -2.2
2,020,987 + PP_1798 0.66 -3.2
2,020,988 - PP_1798 0.66 -4.2
2,020,988 - PP_1798 0.66 -4.3
2,021,020 + PP_1798 0.69 -4.3
2,021,020 + PP_1798 0.69 -0.5
2,021,021 - PP_1798 0.69 -3.6
2,021,021 - PP_1798 0.69 -4.0

Or see this region's nucleotide sequence