Experiment: P. putida South MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1797 and PP_1798 overlap by 4 nucleotides
PP_1797: PP_1797 - HlyD family secretion protein, at 2,018,726 to 2,020,051
_1797
PP_1798: PP_1798 - Outer membrane efflux protein, at 2,020,048 to 2,021,463
_1798
Position (kb)
2018
2019
2020
2021 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2017.832 kb on + strand at 2017.833 kb on - strand at 2017.833 kb on - strand at 2017.846 kb on + strand at 2017.846 kb on + strand at 2017.847 kb on - strand at 2017.867 kb on + strand at 2017.867 kb on + strand at 2017.868 kb on - strand at 2017.882 kb on + strand at 2017.882 kb on + strand at 2017.882 kb on + strand at 2017.882 kb on + strand at 2017.882 kb on + strand at 2017.882 kb on + strand at 2017.883 kb on - strand at 2017.929 kb on + strand at 2017.930 kb on - strand at 2017.966 kb on + strand at 2017.966 kb on + strand at 2017.966 kb on + strand at 2017.966 kb on + strand at 2017.966 kb on + strand at 2017.967 kb on - strand at 2017.967 kb on - strand at 2017.967 kb on - strand at 2017.967 kb on - strand at 2017.967 kb on - strand at 2017.967 kb on - strand at 2018.030 kb on - strand at 2018.085 kb on + strand at 2018.085 kb on + strand at 2018.086 kb on - strand at 2018.086 kb on - strand at 2018.086 kb on - strand at 2018.104 kb on + strand at 2018.104 kb on + strand at 2018.104 kb on + strand at 2018.104 kb on + strand at 2018.105 kb on - strand at 2018.105 kb on - strand at 2018.105 kb on - strand at 2018.105 kb on - strand at 2018.105 kb on - strand at 2018.107 kb on - strand at 2018.107 kb on - strand at 2018.107 kb on - strand at 2018.107 kb on - strand at 2018.138 kb on + strand at 2018.139 kb on - strand at 2018.367 kb on - strand at 2018.367 kb on - strand at 2018.384 kb on - strand at 2018.558 kb on + strand at 2018.559 kb on - strand at 2018.559 kb on - strand at 2018.702 kb on - strand at 2018.723 kb on + strand at 2018.724 kb on - strand at 2018.734 kb on + strand at 2018.735 kb on - strand at 2018.746 kb on + strand at 2018.746 kb on + strand at 2018.746 kb on + strand at 2019.032 kb on + strand, within PP_1797 at 2019.033 kb on - strand, within PP_1797 at 2019.071 kb on - strand, within PP_1797 at 2019.071 kb on - strand, within PP_1797 at 2019.126 kb on + strand, within PP_1797 at 2019.127 kb on - strand, within PP_1797 at 2019.136 kb on + strand, within PP_1797 at 2019.312 kb on - strand, within PP_1797 at 2019.439 kb on + strand, within PP_1797 at 2019.439 kb on + strand, within PP_1797 at 2019.440 kb on - strand at 2019.440 kb on - strand, within PP_1797 at 2019.674 kb on - strand, within PP_1797 at 2019.823 kb on + strand, within PP_1797 at 2019.824 kb on - strand, within PP_1797 at 2019.824 kb on - strand, within PP_1797 at 2019.878 kb on + strand, within PP_1797 at 2019.878 kb on + strand, within PP_1797 at 2019.878 kb on + strand, within PP_1797 at 2019.878 kb on + strand, within PP_1797 at 2019.878 kb on + strand, within PP_1797 at 2019.878 kb on + strand, within PP_1797 at 2019.879 kb on - strand, within PP_1797 at 2019.879 kb on - strand, within PP_1797 at 2019.881 kb on + strand, within PP_1797 at 2019.881 kb on + strand, within PP_1797 at 2019.881 kb on + strand, within PP_1797 at 2019.881 kb on + strand, within PP_1797 at 2019.881 kb on + strand, within PP_1797 at 2019.881 kb on + strand, within PP_1797 at 2019.998 kb on + strand at 2019.998 kb on + strand at 2020.110 kb on + strand at 2020.165 kb on + strand at 2020.165 kb on + strand at 2020.165 kb on + strand at 2020.166 kb on - strand at 2020.166 kb on - strand at 2020.189 kb on + strand at 2020.354 kb on + strand, within PP_1798 at 2020.354 kb on + strand, within PP_1798 at 2020.355 kb on - strand, within PP_1798 at 2020.355 kb on - strand, within PP_1798 at 2020.355 kb on - strand, within PP_1798 at 2020.357 kb on - strand, within PP_1798 at 2020.357 kb on - strand, within PP_1798 at 2020.357 kb on - strand, within PP_1798 at 2020.369 kb on + strand, within PP_1798 at 2020.397 kb on - strand, within PP_1798 at 2020.420 kb on + strand, within PP_1798 at 2020.485 kb on + strand, within PP_1798 at 2020.485 kb on + strand, within PP_1798 at 2020.486 kb on - strand, within PP_1798 at 2020.507 kb on + strand, within PP_1798 at 2020.508 kb on - strand, within PP_1798 at 2020.700 kb on + strand, within PP_1798 at 2020.760 kb on + strand, within PP_1798 at 2020.761 kb on - strand, within PP_1798 at 2020.894 kb on - strand, within PP_1798 at 2020.906 kb on + strand, within PP_1798 at 2020.922 kb on + strand, within PP_1798 at 2020.954 kb on + strand, within PP_1798 at 2020.954 kb on + strand, within PP_1798 at 2020.955 kb on - strand, within PP_1798 at 2020.955 kb on - strand, within PP_1798 at 2020.962 kb on + strand, within PP_1798 at 2020.962 kb on + strand, within PP_1798 at 2020.963 kb on - strand, within PP_1798 at 2020.987 kb on + strand, within PP_1798 at 2020.987 kb on + strand, within PP_1798 at 2020.987 kb on + strand, within PP_1798 at 2020.987 kb on + strand, within PP_1798 at 2020.988 kb on - strand, within PP_1798 at 2020.988 kb on - strand, within PP_1798 at 2021.020 kb on + strand, within PP_1798 at 2021.020 kb on + strand, within PP_1798 at 2021.021 kb on - strand, within PP_1798 at 2021.021 kb on - strand, within PP_1798
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 0.1 remove 2,017,832 + -1.1 2,017,833 - +0.8 2,017,833 - +0.4 2,017,846 + -3.2 2,017,846 + -1.5 2,017,847 - -0.5 2,017,867 + -0.8 2,017,867 + -1.7 2,017,868 - +0.4 2,017,882 + -0.6 2,017,882 + -0.5 2,017,882 + -0.1 2,017,882 + +0.5 2,017,882 + +0.4 2,017,882 + +1.0 2,017,883 - +1.7 2,017,929 + +0.5 2,017,930 - +0.9 2,017,966 + +2.1 2,017,966 + +0.3 2,017,966 + -1.4 2,017,966 + -1.0 2,017,966 + -0.5 2,017,967 - +0.3 2,017,967 - +0.0 2,017,967 - +0.6 2,017,967 - +0.6 2,017,967 - +0.2 2,017,967 - -0.2 2,018,030 - +0.0 2,018,085 + -0.8 2,018,085 + -0.8 2,018,086 - -0.0 2,018,086 - +0.6 2,018,086 - -0.2 2,018,104 + -0.9 2,018,104 + -2.7 2,018,104 + -0.8 2,018,104 + -1.1 2,018,105 - +0.2 2,018,105 - -0.8 2,018,105 - -1.4 2,018,105 - -0.8 2,018,105 - -2.3 2,018,107 - +0.8 2,018,107 - +0.3 2,018,107 - -0.7 2,018,107 - -1.0 2,018,138 + -2.9 2,018,139 - +0.8 2,018,367 - +0.2 2,018,367 - -0.5 2,018,384 - -1.9 2,018,558 + -0.1 2,018,559 - -0.6 2,018,559 - +1.7 2,018,702 - -0.3 2,018,723 + -1.5 2,018,724 - -0.1 2,018,734 + -1.3 2,018,735 - +0.1 2,018,746 + -0.8 2,018,746 + -1.6 2,018,746 + -0.2 2,019,032 + PP_1797 0.23 -1.6 2,019,033 - PP_1797 0.23 +0.2 2,019,071 - PP_1797 0.26 -2.1 2,019,071 - PP_1797 0.26 -0.4 2,019,126 + PP_1797 0.30 -0.8 2,019,127 - PP_1797 0.30 -1.5 2,019,136 + PP_1797 0.31 -4.0 2,019,312 - PP_1797 0.44 -2.2 2,019,439 + PP_1797 0.54 -0.3 2,019,439 + PP_1797 0.54 -2.9 2,019,440 - +1.4 2,019,440 - PP_1797 0.54 -2.3 2,019,674 - PP_1797 0.71 -4.0 2,019,823 + PP_1797 0.83 -1.4 2,019,824 - PP_1797 0.83 -2.2 2,019,824 - PP_1797 0.83 -2.3 2,019,878 + PP_1797 0.87 -2.0 2,019,878 + PP_1797 0.87 -3.8 2,019,878 + PP_1797 0.87 -0.2 2,019,878 + PP_1797 0.87 -4.4 2,019,878 + PP_1797 0.87 -1.8 2,019,878 + PP_1797 0.87 -2.0 2,019,879 - PP_1797 0.87 -2.0 2,019,879 - PP_1797 0.87 -1.5 2,019,881 + PP_1797 0.87 -3.3 2,019,881 + PP_1797 0.87 -3.8 2,019,881 + PP_1797 0.87 -3.0 2,019,881 + PP_1797 0.87 -1.5 2,019,881 + PP_1797 0.87 -2.3 2,019,881 + PP_1797 0.87 -1.4 2,019,998 + -2.7 2,019,998 + -4.6 2,020,110 + -1.1 2,020,165 + -1.4 2,020,165 + -3.7 2,020,165 + -2.3 2,020,166 - -1.6 2,020,166 - -2.6 2,020,189 + -2.8 2,020,354 + PP_1798 0.22 -4.4 2,020,354 + PP_1798 0.22 -1.6 2,020,355 - PP_1798 0.22 -3.3 2,020,355 - PP_1798 0.22 -4.6 2,020,355 - PP_1798 0.22 -2.8 2,020,357 - PP_1798 0.22 -4.1 2,020,357 - PP_1798 0.22 -0.2 2,020,357 - PP_1798 0.22 -4.6 2,020,369 + PP_1798 0.23 -3.3 2,020,397 - PP_1798 0.25 -4.0 2,020,420 + PP_1798 0.26 -1.8 2,020,485 + PP_1798 0.31 -4.4 2,020,485 + PP_1798 0.31 -3.4 2,020,486 - PP_1798 0.31 -2.4 2,020,507 + PP_1798 0.32 -4.0 2,020,508 - PP_1798 0.32 -2.4 2,020,700 + PP_1798 0.46 -2.8 2,020,760 + PP_1798 0.50 -1.5 2,020,761 - PP_1798 0.50 -2.5 2,020,894 - PP_1798 0.60 -4.7 2,020,906 + PP_1798 0.61 -1.6 2,020,922 + PP_1798 0.62 -3.8 2,020,954 + PP_1798 0.64 -3.4 2,020,954 + PP_1798 0.64 -2.5 2,020,955 - PP_1798 0.64 -3.3 2,020,955 - PP_1798 0.64 -3.2 2,020,962 + PP_1798 0.65 -3.0 2,020,962 + PP_1798 0.65 -2.4 2,020,963 - PP_1798 0.65 -2.7 2,020,987 + PP_1798 0.66 -2.2 2,020,987 + PP_1798 0.66 -2.5 2,020,987 + PP_1798 0.66 -2.2 2,020,987 + PP_1798 0.66 -3.2 2,020,988 - PP_1798 0.66 -4.2 2,020,988 - PP_1798 0.66 -4.3 2,021,020 + PP_1798 0.69 -4.3 2,021,020 + PP_1798 0.69 -0.5 2,021,021 - PP_1798 0.69 -3.6 2,021,021 - PP_1798 0.69 -4.0
Or see this region's nucleotide sequence