Strain Fitness in Pseudomonas putida KT2440 around PP_1795

Experiment: P. putida South MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1794 and PP_1795 are separated by 17 nucleotides PP_1794: PP_1794 - conserved hypothetical protein, at 2,014,045 to 2,015,487 _1794 PP_1795: PP_1795 - conserved protein of unknown function, at 2,015,505 to 2,016,392 _1795 Position (kb) 2015 2016 2017Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2014.529 kb on + strand, within PP_1794at 2014.530 kb on - strand, within PP_1794at 2014.530 kb on - strand, within PP_1794at 2014.557 kb on + strand, within PP_1794at 2014.557 kb on + strand, within PP_1794at 2014.558 kb on - strand, within PP_1794at 2014.558 kb on - strand, within PP_1794at 2014.629 kb on - strand, within PP_1794at 2014.660 kb on + strand, within PP_1794at 2014.686 kb on - strand, within PP_1794at 2014.686 kb on - strand, within PP_1794at 2014.841 kb on + strand, within PP_1794at 2014.842 kb on - strand, within PP_1794at 2014.842 kb on - strand, within PP_1794at 2014.842 kb on - strand, within PP_1794at 2015.092 kb on - strand, within PP_1794at 2015.092 kb on - strand, within PP_1794at 2015.095 kb on + strand, within PP_1794at 2015.095 kb on + strand, within PP_1794at 2015.095 kb on + strand, within PP_1794at 2015.095 kb on + strand, within PP_1794at 2015.095 kb on + strand, within PP_1794at 2015.096 kb on - strand, within PP_1794at 2015.172 kb on + strand, within PP_1794at 2015.173 kb on - strand, within PP_1794at 2015.189 kb on - strand, within PP_1794at 2015.189 kb on - strand, within PP_1794at 2015.216 kb on + strand, within PP_1794at 2015.217 kb on - strand, within PP_1794at 2015.217 kb on - strand, within PP_1794at 2015.217 kb on - strand, within PP_1794at 2015.217 kb on - strand, within PP_1794at 2015.290 kb on - strand, within PP_1794at 2015.290 kb on - strand, within PP_1794at 2015.368 kb on + strandat 2015.369 kb on - strandat 2015.373 kb on + strandat 2015.397 kb on + strandat 2015.397 kb on + strandat 2015.397 kb on + strandat 2015.398 kb on - strandat 2015.398 kb on - strandat 2015.475 kb on + strandat 2015.480 kb on + strandat 2015.480 kb on + strandat 2015.480 kb on + strandat 2015.481 kb on - strandat 2015.492 kb on + strandat 2015.493 kb on - strandat 2015.528 kb on + strandat 2015.529 kb on - strandat 2015.529 kb on - strandat 2015.529 kb on - strandat 2015.567 kb on + strandat 2015.567 kb on + strandat 2015.592 kb on - strandat 2015.716 kb on + strand, within PP_1795at 2015.716 kb on + strand, within PP_1795at 2015.716 kb on + strand, within PP_1795at 2015.717 kb on - strand, within PP_1795at 2015.717 kb on - strand, within PP_1795at 2015.717 kb on - strand, within PP_1795at 2015.736 kb on + strand, within PP_1795at 2015.737 kb on - strand, within PP_1795at 2015.744 kb on + strand, within PP_1795at 2015.745 kb on - strand, within PP_1795at 2015.844 kb on - strand, within PP_1795at 2015.846 kb on - strand, within PP_1795at 2015.846 kb on - strand, within PP_1795at 2015.846 kb on - strand, within PP_1795at 2015.846 kb on - strand, within PP_1795at 2015.846 kb on - strand, within PP_1795at 2015.975 kb on + strand, within PP_1795at 2015.976 kb on - strand, within PP_1795at 2016.012 kb on - strand, within PP_1795at 2016.047 kb on - strand, within PP_1795at 2016.106 kb on - strand, within PP_1795at 2016.106 kb on - strand, within PP_1795at 2016.106 kb on - strand, within PP_1795at 2016.122 kb on + strand, within PP_1795at 2016.122 kb on + strand, within PP_1795at 2016.123 kb on - strand, within PP_1795at 2016.123 kb on - strand, within PP_1795at 2016.123 kb on - strand, within PP_1795at 2016.123 kb on - strand, within PP_1795at 2016.123 kb on - strand, within PP_1795at 2016.123 kb on - strand, within PP_1795at 2016.123 kb on - strand, within PP_1795at 2016.123 kb on - strand, within PP_1795at 2016.123 kb on - strand, within PP_1795at 2016.127 kb on + strand, within PP_1795at 2016.127 kb on + strand, within PP_1795at 2016.127 kb on + strand, within PP_1795at 2016.128 kb on - strand, within PP_1795at 2016.128 kb on - strand, within PP_1795at 2016.128 kb on - strand, within PP_1795at 2016.276 kb on + strand, within PP_1795at 2016.319 kb on + strandat 2016.319 kb on + strandat 2016.319 kb on + strandat 2016.319 kb on + strandat 2016.320 kb on - strandat 2016.320 kb on - strandat 2016.320 kb on - strandat 2016.320 kb on - strandat 2016.320 kb on - strandat 2016.320 kb on - strandat 2016.320 kb on - strandat 2016.386 kb on + strandat 2016.386 kb on + strandat 2016.386 kb on + strandat 2016.386 kb on + strandat 2016.386 kb on + strandat 2016.386 kb on + strandat 2016.386 kb on + strandat 2016.387 kb on - strandat 2016.401 kb on + strandat 2016.401 kb on + strandat 2016.402 kb on - strandat 2016.413 kb on - strandat 2016.429 kb on + strandat 2016.430 kb on - strandat 2016.430 kb on - strandat 2016.434 kb on - strandat 2016.434 kb on - strandat 2016.434 kb on - strandat 2016.434 kb on - strandat 2016.546 kb on - strandat 2016.882 kb on + strandat 2016.882 kb on + strandat 2016.883 kb on - strandat 2016.883 kb on - strandat 2016.912 kb on + strandat 2016.913 kb on - strandat 2016.919 kb on - strandat 2016.919 kb on - strandat 2016.943 kb on - strandat 2016.970 kb on - strandat 2017.025 kb on + strandat 2017.025 kb on + strandat 2017.025 kb on + strandat 2017.025 kb on + strandat 2017.026 kb on - strandat 2017.026 kb on - strandat 2017.026 kb on - strandat 2017.026 kb on - strandat 2017.026 kb on - strandat 2017.033 kb on - strandat 2017.039 kb on + strandat 2017.039 kb on + strandat 2017.040 kb on - strandat 2017.040 kb on - strandat 2017.040 kb on - strandat 2017.133 kb on + strandat 2017.134 kb on - strandat 2017.173 kb on + strandat 2017.174 kb on - strandat 2017.174 kb on - strandat 2017.174 kb on - strandat 2017.174 kb on - strandat 2017.175 kb on + strandat 2017.175 kb on + strandat 2017.175 kb on + strandat 2017.176 kb on - strandat 2017.176 kb on - strandat 2017.182 kb on + strandat 2017.182 kb on + strandat 2017.182 kb on + strandat 2017.183 kb on - strandat 2017.183 kb on - strandat 2017.187 kb on + strandat 2017.187 kb on + strandat 2017.187 kb on + strandat 2017.187 kb on + strandat 2017.187 kb on + strandat 2017.187 kb on + strandat 2017.187 kb on + strandat 2017.188 kb on - strandat 2017.188 kb on - strandat 2017.188 kb on - strandat 2017.188 kb on - strandat 2017.188 kb on - strandat 2017.188 kb on - strandat 2017.188 kb on - strandat 2017.188 kb on - strandat 2017.188 kb on - strandat 2017.214 kb on - strandat 2017.261 kb on + strandat 2017.284 kb on + strandat 2017.284 kb on + strandat 2017.293 kb on + strandat 2017.293 kb on + strandat 2017.356 kb on - strandat 2017.356 kb on - strandat 2017.356 kb on - strandat 2017.357 kb on + strandat 2017.357 kb on + strandat 2017.357 kb on + strandat 2017.374 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
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2,014,529 + PP_1794 0.34 -0.2
2,014,530 - PP_1794 0.34 -1.3
2,014,530 - PP_1794 0.34 -1.3
2,014,557 + PP_1794 0.35 +1.2
2,014,557 + PP_1794 0.35 +0.6
2,014,558 - PP_1794 0.36 -0.3
2,014,558 - PP_1794 0.36 -0.4
2,014,629 - PP_1794 0.40 +0.0
2,014,660 + PP_1794 0.43 -0.7
2,014,686 - PP_1794 0.44 -1.6
2,014,686 - PP_1794 0.44 -0.1
2,014,841 + PP_1794 0.55 +0.1
2,014,842 - PP_1794 0.55 -0.1
2,014,842 - PP_1794 0.55 -0.1
2,014,842 - PP_1794 0.55 -0.1
2,015,092 - PP_1794 0.73 -0.9
2,015,092 - PP_1794 0.73 +0.6
2,015,095 + PP_1794 0.73 -0.8
2,015,095 + PP_1794 0.73 -0.3
2,015,095 + PP_1794 0.73 +0.7
2,015,095 + PP_1794 0.73 -0.6
2,015,095 + PP_1794 0.73 +1.4
2,015,096 - PP_1794 0.73 -2.9
2,015,172 + PP_1794 0.78 +0.6
2,015,173 - PP_1794 0.78 -0.2
2,015,189 - PP_1794 0.79 +0.2
2,015,189 - PP_1794 0.79 +0.0
2,015,216 + PP_1794 0.81 -0.5
2,015,217 - PP_1794 0.81 -0.3
2,015,217 - PP_1794 0.81 -0.5
2,015,217 - PP_1794 0.81 -0.1
2,015,217 - PP_1794 0.81 -1.2
2,015,290 - PP_1794 0.86 +0.8
2,015,290 - PP_1794 0.86 -0.3
2,015,368 + +1.1
2,015,369 - +0.5
2,015,373 + +0.9
2,015,397 + +0.1
2,015,397 + +0.2
2,015,397 + +1.1
2,015,398 - +1.1
2,015,398 - +0.1
2,015,475 + -0.1
2,015,480 + +0.9
2,015,480 + -1.4
2,015,480 + +0.5
2,015,481 - +2.2
2,015,492 + +0.7
2,015,493 - +0.9
2,015,528 + +0.3
2,015,529 - +0.8
2,015,529 - -0.0
2,015,529 - +0.9
2,015,567 + +1.0
2,015,567 + +0.8
2,015,592 - +2.4
2,015,716 + PP_1795 0.24 +1.9
2,015,716 + PP_1795 0.24 +1.2
2,015,716 + PP_1795 0.24 +1.9
2,015,717 - PP_1795 0.24 +1.3
2,015,717 - PP_1795 0.24 +2.0
2,015,717 - PP_1795 0.24 +1.0
2,015,736 + PP_1795 0.26 +1.1
2,015,737 - PP_1795 0.26 +0.7
2,015,744 + PP_1795 0.27 +1.2
2,015,745 - PP_1795 0.27 +0.2
2,015,844 - PP_1795 0.38 +1.3
2,015,846 - PP_1795 0.38 +0.3
2,015,846 - PP_1795 0.38 +1.4
2,015,846 - PP_1795 0.38 +0.9
2,015,846 - PP_1795 0.38 +1.8
2,015,846 - PP_1795 0.38 +1.7
2,015,975 + PP_1795 0.53 +1.0
2,015,976 - PP_1795 0.53 +1.8
2,016,012 - PP_1795 0.57 +2.5
2,016,047 - PP_1795 0.61 +1.4
2,016,106 - PP_1795 0.68 +2.3
2,016,106 - PP_1795 0.68 +1.6
2,016,106 - PP_1795 0.68 +0.9
2,016,122 + PP_1795 0.69 +1.2
2,016,122 + PP_1795 0.69 -1.0
2,016,123 - PP_1795 0.70 +1.7
2,016,123 - PP_1795 0.70 +2.1
2,016,123 - PP_1795 0.70 +0.9
2,016,123 - PP_1795 0.70 +1.8
2,016,123 - PP_1795 0.70 +1.9
2,016,123 - PP_1795 0.70 +2.9
2,016,123 - PP_1795 0.70 +1.4
2,016,123 - PP_1795 0.70 +1.5
2,016,123 - PP_1795 0.70 +1.1
2,016,127 + PP_1795 0.70 +2.1
2,016,127 + PP_1795 0.70 +1.0
2,016,127 + PP_1795 0.70 +1.1
2,016,128 - PP_1795 0.70 +2.3
2,016,128 - PP_1795 0.70 +2.2
2,016,128 - PP_1795 0.70 +1.0
2,016,276 + PP_1795 0.87 +0.5
2,016,319 + +1.3
2,016,319 + +0.1
2,016,319 + +1.5
2,016,319 + +1.0
2,016,320 - +0.7
2,016,320 - +1.9
2,016,320 - +2.2
2,016,320 - +0.8
2,016,320 - +1.5
2,016,320 - +2.6
2,016,320 - +1.8
2,016,386 + +1.4
2,016,386 + +1.7
2,016,386 + +1.0
2,016,386 + +0.8
2,016,386 + +1.6
2,016,386 + +1.2
2,016,386 + +1.2
2,016,387 - +1.5
2,016,401 + +0.1
2,016,401 + +1.1
2,016,402 - +1.7
2,016,413 - +1.4
2,016,429 + +1.4
2,016,430 - +1.0
2,016,430 - +1.1
2,016,434 - +2.3
2,016,434 - +2.0
2,016,434 - -0.2
2,016,434 - +0.8
2,016,546 - -0.5
2,016,882 + -0.1
2,016,882 + -1.6
2,016,883 - +1.6
2,016,883 - -2.0
2,016,912 + -0.7
2,016,913 - +0.8
2,016,919 - +0.4
2,016,919 - +0.1
2,016,943 - +0.2
2,016,970 - +0.8
2,017,025 + -0.4
2,017,025 + +0.6
2,017,025 + -1.0
2,017,025 + +0.0
2,017,026 - +1.5
2,017,026 - +0.5
2,017,026 - +0.1
2,017,026 - +1.7
2,017,026 - -0.7
2,017,033 - +1.0
2,017,039 + -0.4
2,017,039 + -0.9
2,017,040 - +0.2
2,017,040 - +1.4
2,017,040 - +0.4
2,017,133 + +0.1
2,017,134 - -0.1
2,017,173 + -1.9
2,017,174 - -1.1
2,017,174 - +0.3
2,017,174 - -1.5
2,017,174 - +0.6
2,017,175 + -0.9
2,017,175 + -0.9
2,017,175 + -0.7
2,017,176 - -1.2
2,017,176 - +1.5
2,017,182 + -0.9
2,017,182 + -0.2
2,017,182 + +0.4
2,017,183 - +1.3
2,017,183 - -0.0
2,017,187 + +0.7
2,017,187 + +0.2
2,017,187 + -1.3
2,017,187 + -0.3
2,017,187 + -1.1
2,017,187 + -0.4
2,017,187 + +0.0
2,017,188 - -0.9
2,017,188 - +0.1
2,017,188 - +0.3
2,017,188 - +0.6
2,017,188 - +0.3
2,017,188 - +0.4
2,017,188 - +1.0
2,017,188 - -0.2
2,017,188 - +1.1
2,017,214 - +0.9
2,017,261 + -2.3
2,017,284 + -1.9
2,017,284 + +0.8
2,017,293 + +0.3
2,017,293 + -2.1
2,017,356 - +0.7
2,017,356 - -1.1
2,017,356 - +0.7
2,017,357 + -3.2
2,017,357 + -2.4
2,017,357 + +0.8
2,017,374 + -0.2

Or see this region's nucleotide sequence