Experiment: P. putida South MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1794 and PP_1795 are separated by 17 nucleotides
PP_1794: PP_1794 - conserved hypothetical protein, at 2,014,045 to 2,015,487
_1794
PP_1795: PP_1795 - conserved protein of unknown function, at 2,015,505 to 2,016,392
_1795
Position (kb)
2015
2016
2017 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2014.529 kb on + strand, within PP_1794 at 2014.530 kb on - strand, within PP_1794 at 2014.530 kb on - strand, within PP_1794 at 2014.557 kb on + strand, within PP_1794 at 2014.557 kb on + strand, within PP_1794 at 2014.558 kb on - strand, within PP_1794 at 2014.558 kb on - strand, within PP_1794 at 2014.629 kb on - strand, within PP_1794 at 2014.660 kb on + strand, within PP_1794 at 2014.686 kb on - strand, within PP_1794 at 2014.686 kb on - strand, within PP_1794 at 2014.841 kb on + strand, within PP_1794 at 2014.842 kb on - strand, within PP_1794 at 2014.842 kb on - strand, within PP_1794 at 2014.842 kb on - strand, within PP_1794 at 2015.092 kb on - strand, within PP_1794 at 2015.092 kb on - strand, within PP_1794 at 2015.095 kb on + strand, within PP_1794 at 2015.095 kb on + strand, within PP_1794 at 2015.095 kb on + strand, within PP_1794 at 2015.095 kb on + strand, within PP_1794 at 2015.095 kb on + strand, within PP_1794 at 2015.096 kb on - strand, within PP_1794 at 2015.172 kb on + strand, within PP_1794 at 2015.173 kb on - strand, within PP_1794 at 2015.189 kb on - strand, within PP_1794 at 2015.189 kb on - strand, within PP_1794 at 2015.216 kb on + strand, within PP_1794 at 2015.217 kb on - strand, within PP_1794 at 2015.217 kb on - strand, within PP_1794 at 2015.217 kb on - strand, within PP_1794 at 2015.217 kb on - strand, within PP_1794 at 2015.290 kb on - strand, within PP_1794 at 2015.290 kb on - strand, within PP_1794 at 2015.368 kb on + strand at 2015.369 kb on - strand at 2015.373 kb on + strand at 2015.397 kb on + strand at 2015.397 kb on + strand at 2015.397 kb on + strand at 2015.398 kb on - strand at 2015.398 kb on - strand at 2015.475 kb on + strand at 2015.480 kb on + strand at 2015.480 kb on + strand at 2015.480 kb on + strand at 2015.481 kb on - strand at 2015.492 kb on + strand at 2015.493 kb on - strand at 2015.528 kb on + strand at 2015.529 kb on - strand at 2015.529 kb on - strand at 2015.529 kb on - strand at 2015.567 kb on + strand at 2015.567 kb on + strand at 2015.592 kb on - strand at 2015.716 kb on + strand, within PP_1795 at 2015.716 kb on + strand, within PP_1795 at 2015.716 kb on + strand, within PP_1795 at 2015.717 kb on - strand, within PP_1795 at 2015.717 kb on - strand, within PP_1795 at 2015.717 kb on - strand, within PP_1795 at 2015.736 kb on + strand, within PP_1795 at 2015.737 kb on - strand, within PP_1795 at 2015.744 kb on + strand, within PP_1795 at 2015.745 kb on - strand, within PP_1795 at 2015.844 kb on - strand, within PP_1795 at 2015.846 kb on - strand, within PP_1795 at 2015.846 kb on - strand, within PP_1795 at 2015.846 kb on - strand, within PP_1795 at 2015.846 kb on - strand, within PP_1795 at 2015.846 kb on - strand, within PP_1795 at 2015.975 kb on + strand, within PP_1795 at 2015.976 kb on - strand, within PP_1795 at 2016.012 kb on - strand, within PP_1795 at 2016.047 kb on - strand, within PP_1795 at 2016.106 kb on - strand, within PP_1795 at 2016.106 kb on - strand, within PP_1795 at 2016.106 kb on - strand, within PP_1795 at 2016.122 kb on + strand, within PP_1795 at 2016.122 kb on + strand, within PP_1795 at 2016.123 kb on - strand, within PP_1795 at 2016.123 kb on - strand, within PP_1795 at 2016.123 kb on - strand, within PP_1795 at 2016.123 kb on - strand, within PP_1795 at 2016.123 kb on - strand, within PP_1795 at 2016.123 kb on - strand, within PP_1795 at 2016.123 kb on - strand, within PP_1795 at 2016.123 kb on - strand, within PP_1795 at 2016.123 kb on - strand, within PP_1795 at 2016.127 kb on + strand, within PP_1795 at 2016.127 kb on + strand, within PP_1795 at 2016.127 kb on + strand, within PP_1795 at 2016.128 kb on - strand, within PP_1795 at 2016.128 kb on - strand, within PP_1795 at 2016.128 kb on - strand, within PP_1795 at 2016.276 kb on + strand, within PP_1795 at 2016.319 kb on + strand at 2016.319 kb on + strand at 2016.319 kb on + strand at 2016.319 kb on + strand at 2016.320 kb on - strand at 2016.320 kb on - strand at 2016.320 kb on - strand at 2016.320 kb on - strand at 2016.320 kb on - strand at 2016.320 kb on - strand at 2016.320 kb on - strand at 2016.386 kb on + strand at 2016.386 kb on + strand at 2016.386 kb on + strand at 2016.386 kb on + strand at 2016.386 kb on + strand at 2016.386 kb on + strand at 2016.386 kb on + strand at 2016.387 kb on - strand at 2016.401 kb on + strand at 2016.401 kb on + strand at 2016.402 kb on - strand at 2016.413 kb on - strand at 2016.429 kb on + strand at 2016.430 kb on - strand at 2016.430 kb on - strand at 2016.434 kb on - strand at 2016.434 kb on - strand at 2016.434 kb on - strand at 2016.434 kb on - strand at 2016.546 kb on - strand at 2016.882 kb on + strand at 2016.882 kb on + strand at 2016.883 kb on - strand at 2016.883 kb on - strand at 2016.912 kb on + strand at 2016.913 kb on - strand at 2016.919 kb on - strand at 2016.919 kb on - strand at 2016.943 kb on - strand at 2016.970 kb on - strand at 2017.025 kb on + strand at 2017.025 kb on + strand at 2017.025 kb on + strand at 2017.025 kb on + strand at 2017.026 kb on - strand at 2017.026 kb on - strand at 2017.026 kb on - strand at 2017.026 kb on - strand at 2017.026 kb on - strand at 2017.033 kb on - strand at 2017.039 kb on + strand at 2017.039 kb on + strand at 2017.040 kb on - strand at 2017.040 kb on - strand at 2017.040 kb on - strand at 2017.133 kb on + strand at 2017.134 kb on - strand at 2017.173 kb on + strand at 2017.174 kb on - strand at 2017.174 kb on - strand at 2017.174 kb on - strand at 2017.174 kb on - strand at 2017.175 kb on + strand at 2017.175 kb on + strand at 2017.175 kb on + strand at 2017.176 kb on - strand at 2017.176 kb on - strand at 2017.182 kb on + strand at 2017.182 kb on + strand at 2017.182 kb on + strand at 2017.183 kb on - strand at 2017.183 kb on - strand at 2017.187 kb on + strand at 2017.187 kb on + strand at 2017.187 kb on + strand at 2017.187 kb on + strand at 2017.187 kb on + strand at 2017.187 kb on + strand at 2017.187 kb on + strand at 2017.188 kb on - strand at 2017.188 kb on - strand at 2017.188 kb on - strand at 2017.188 kb on - strand at 2017.188 kb on - strand at 2017.188 kb on - strand at 2017.188 kb on - strand at 2017.188 kb on - strand at 2017.188 kb on - strand at 2017.214 kb on - strand at 2017.261 kb on + strand at 2017.284 kb on + strand at 2017.284 kb on + strand at 2017.293 kb on + strand at 2017.293 kb on + strand at 2017.356 kb on - strand at 2017.356 kb on - strand at 2017.356 kb on - strand at 2017.357 kb on + strand at 2017.357 kb on + strand at 2017.357 kb on + strand at 2017.374 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 0.1 remove 2,014,529 + PP_1794 0.34 -0.2 2,014,530 - PP_1794 0.34 -1.3 2,014,530 - PP_1794 0.34 -1.3 2,014,557 + PP_1794 0.35 +1.2 2,014,557 + PP_1794 0.35 +0.6 2,014,558 - PP_1794 0.36 -0.3 2,014,558 - PP_1794 0.36 -0.4 2,014,629 - PP_1794 0.40 +0.0 2,014,660 + PP_1794 0.43 -0.7 2,014,686 - PP_1794 0.44 -1.6 2,014,686 - PP_1794 0.44 -0.1 2,014,841 + PP_1794 0.55 +0.1 2,014,842 - PP_1794 0.55 -0.1 2,014,842 - PP_1794 0.55 -0.1 2,014,842 - PP_1794 0.55 -0.1 2,015,092 - PP_1794 0.73 -0.9 2,015,092 - PP_1794 0.73 +0.6 2,015,095 + PP_1794 0.73 -0.8 2,015,095 + PP_1794 0.73 -0.3 2,015,095 + PP_1794 0.73 +0.7 2,015,095 + PP_1794 0.73 -0.6 2,015,095 + PP_1794 0.73 +1.4 2,015,096 - PP_1794 0.73 -2.9 2,015,172 + PP_1794 0.78 +0.6 2,015,173 - PP_1794 0.78 -0.2 2,015,189 - PP_1794 0.79 +0.2 2,015,189 - PP_1794 0.79 +0.0 2,015,216 + PP_1794 0.81 -0.5 2,015,217 - PP_1794 0.81 -0.3 2,015,217 - PP_1794 0.81 -0.5 2,015,217 - PP_1794 0.81 -0.1 2,015,217 - PP_1794 0.81 -1.2 2,015,290 - PP_1794 0.86 +0.8 2,015,290 - PP_1794 0.86 -0.3 2,015,368 + +1.1 2,015,369 - +0.5 2,015,373 + +0.9 2,015,397 + +0.1 2,015,397 + +0.2 2,015,397 + +1.1 2,015,398 - +1.1 2,015,398 - +0.1 2,015,475 + -0.1 2,015,480 + +0.9 2,015,480 + -1.4 2,015,480 + +0.5 2,015,481 - +2.2 2,015,492 + +0.7 2,015,493 - +0.9 2,015,528 + +0.3 2,015,529 - +0.8 2,015,529 - -0.0 2,015,529 - +0.9 2,015,567 + +1.0 2,015,567 + +0.8 2,015,592 - +2.4 2,015,716 + PP_1795 0.24 +1.9 2,015,716 + PP_1795 0.24 +1.2 2,015,716 + PP_1795 0.24 +1.9 2,015,717 - PP_1795 0.24 +1.3 2,015,717 - PP_1795 0.24 +2.0 2,015,717 - PP_1795 0.24 +1.0 2,015,736 + PP_1795 0.26 +1.1 2,015,737 - PP_1795 0.26 +0.7 2,015,744 + PP_1795 0.27 +1.2 2,015,745 - PP_1795 0.27 +0.2 2,015,844 - PP_1795 0.38 +1.3 2,015,846 - PP_1795 0.38 +0.3 2,015,846 - PP_1795 0.38 +1.4 2,015,846 - PP_1795 0.38 +0.9 2,015,846 - PP_1795 0.38 +1.8 2,015,846 - PP_1795 0.38 +1.7 2,015,975 + PP_1795 0.53 +1.0 2,015,976 - PP_1795 0.53 +1.8 2,016,012 - PP_1795 0.57 +2.5 2,016,047 - PP_1795 0.61 +1.4 2,016,106 - PP_1795 0.68 +2.3 2,016,106 - PP_1795 0.68 +1.6 2,016,106 - PP_1795 0.68 +0.9 2,016,122 + PP_1795 0.69 +1.2 2,016,122 + PP_1795 0.69 -1.0 2,016,123 - PP_1795 0.70 +1.7 2,016,123 - PP_1795 0.70 +2.1 2,016,123 - PP_1795 0.70 +0.9 2,016,123 - PP_1795 0.70 +1.8 2,016,123 - PP_1795 0.70 +1.9 2,016,123 - PP_1795 0.70 +2.9 2,016,123 - PP_1795 0.70 +1.4 2,016,123 - PP_1795 0.70 +1.5 2,016,123 - PP_1795 0.70 +1.1 2,016,127 + PP_1795 0.70 +2.1 2,016,127 + PP_1795 0.70 +1.0 2,016,127 + PP_1795 0.70 +1.1 2,016,128 - PP_1795 0.70 +2.3 2,016,128 - PP_1795 0.70 +2.2 2,016,128 - PP_1795 0.70 +1.0 2,016,276 + PP_1795 0.87 +0.5 2,016,319 + +1.3 2,016,319 + +0.1 2,016,319 + +1.5 2,016,319 + +1.0 2,016,320 - +0.7 2,016,320 - +1.9 2,016,320 - +2.2 2,016,320 - +0.8 2,016,320 - +1.5 2,016,320 - +2.6 2,016,320 - +1.8 2,016,386 + +1.4 2,016,386 + +1.7 2,016,386 + +1.0 2,016,386 + +0.8 2,016,386 + +1.6 2,016,386 + +1.2 2,016,386 + +1.2 2,016,387 - +1.5 2,016,401 + +0.1 2,016,401 + +1.1 2,016,402 - +1.7 2,016,413 - +1.4 2,016,429 + +1.4 2,016,430 - +1.0 2,016,430 - +1.1 2,016,434 - +2.3 2,016,434 - +2.0 2,016,434 - -0.2 2,016,434 - +0.8 2,016,546 - -0.5 2,016,882 + -0.1 2,016,882 + -1.6 2,016,883 - +1.6 2,016,883 - -2.0 2,016,912 + -0.7 2,016,913 - +0.8 2,016,919 - +0.4 2,016,919 - +0.1 2,016,943 - +0.2 2,016,970 - +0.8 2,017,025 + -0.4 2,017,025 + +0.6 2,017,025 + -1.0 2,017,025 + +0.0 2,017,026 - +1.5 2,017,026 - +0.5 2,017,026 - +0.1 2,017,026 - +1.7 2,017,026 - -0.7 2,017,033 - +1.0 2,017,039 + -0.4 2,017,039 + -0.9 2,017,040 - +0.2 2,017,040 - +1.4 2,017,040 - +0.4 2,017,133 + +0.1 2,017,134 - -0.1 2,017,173 + -1.9 2,017,174 - -1.1 2,017,174 - +0.3 2,017,174 - -1.5 2,017,174 - +0.6 2,017,175 + -0.9 2,017,175 + -0.9 2,017,175 + -0.7 2,017,176 - -1.2 2,017,176 - +1.5 2,017,182 + -0.9 2,017,182 + -0.2 2,017,182 + +0.4 2,017,183 - +1.3 2,017,183 - -0.0 2,017,187 + +0.7 2,017,187 + +0.2 2,017,187 + -1.3 2,017,187 + -0.3 2,017,187 + -1.1 2,017,187 + -0.4 2,017,187 + +0.0 2,017,188 - -0.9 2,017,188 - +0.1 2,017,188 - +0.3 2,017,188 - +0.6 2,017,188 - +0.3 2,017,188 - +0.4 2,017,188 - +1.0 2,017,188 - -0.2 2,017,188 - +1.1 2,017,214 - +0.9 2,017,261 + -2.3 2,017,284 + -1.9 2,017,284 + +0.8 2,017,293 + +0.3 2,017,293 + -2.1 2,017,356 - +0.7 2,017,356 - -1.1 2,017,356 - +0.7 2,017,357 + -3.2 2,017,357 + -2.4 2,017,357 + +0.8 2,017,374 + -0.2
Or see this region's nucleotide sequence