Strain Fitness in Pseudomonas putida KT2440 around PP_1786

Experiment: P. putida South MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_1785 and PP_1786 are separated by 580 nucleotidesPP_1786 and PP_1787 overlap by 4 nucleotides PP_1785: PP_1785 - dTDP-glucose 4,6-dehydratase 2, at 1,998,379 to 1,999,479 _1785 PP_1786: PP_1786 - putative Glycosyl transferase, at 2,000,060 to 2,003,503 _1786 PP_1787: PP_1787 - conserved protein of unknown function, at 2,003,500 to 2,004,510 _1787 Position (kb) 2000 2001 2002 2003 2004Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1999.472 kb on - strandat 1999.491 kb on - strandat 1999.578 kb on + strandat 1999.579 kb on - strandat 1999.579 kb on - strandat 1999.602 kb on - strandat 1999.694 kb on + strandat 1999.694 kb on + strandat 1999.785 kb on + strandat 1999.785 kb on + strandat 1999.795 kb on + strandat 1999.795 kb on + strandat 1999.796 kb on - strandat 1999.796 kb on - strandat 1999.800 kb on + strandat 1999.800 kb on + strandat 1999.819 kb on + strandat 1999.907 kb on - strandat 1999.977 kb on + strandat 1999.998 kb on + strandat 2000.047 kb on - strandat 2000.068 kb on + strandat 2000.068 kb on + strandat 2000.088 kb on + strandat 2000.088 kb on + strandat 2000.088 kb on + strandat 2000.113 kb on + strandat 2000.205 kb on + strandat 2000.205 kb on + strandat 2000.205 kb on + strandat 2000.206 kb on - strandat 2000.438 kb on - strand, within PP_1786at 2000.488 kb on + strand, within PP_1786at 2000.489 kb on - strand, within PP_1786at 2000.526 kb on + strand, within PP_1786at 2000.526 kb on + strand, within PP_1786at 2000.617 kb on + strand, within PP_1786at 2000.617 kb on + strand, within PP_1786at 2000.619 kb on + strand, within PP_1786at 2000.619 kb on + strand, within PP_1786at 2000.638 kb on + strand, within PP_1786at 2000.644 kb on + strand, within PP_1786at 2000.680 kb on - strandat 2000.705 kb on + strand, within PP_1786at 2000.705 kb on + strand, within PP_1786at 2000.705 kb on + strand, within PP_1786at 2000.706 kb on - strand, within PP_1786at 2000.804 kb on + strand, within PP_1786at 2000.804 kb on + strand, within PP_1786at 2000.804 kb on + strand, within PP_1786at 2000.804 kb on + strand, within PP_1786at 2000.804 kb on + strand, within PP_1786at 2000.804 kb on + strand, within PP_1786at 2000.804 kb on + strand, within PP_1786at 2000.805 kb on - strand, within PP_1786at 2000.827 kb on + strand, within PP_1786at 2000.841 kb on - strand, within PP_1786at 2000.956 kb on + strand, within PP_1786at 2000.956 kb on + strand, within PP_1786at 2001.093 kb on - strand, within PP_1786at 2001.093 kb on - strand, within PP_1786at 2001.093 kb on - strand, within PP_1786at 2001.114 kb on - strand, within PP_1786at 2001.114 kb on - strand, within PP_1786at 2001.134 kb on + strand, within PP_1786at 2001.134 kb on + strandat 2001.135 kb on - strand, within PP_1786at 2001.135 kb on - strandat 2001.214 kb on - strand, within PP_1786at 2001.233 kb on - strand, within PP_1786at 2001.234 kb on + strand, within PP_1786at 2001.396 kb on + strand, within PP_1786at 2001.397 kb on - strand, within PP_1786at 2001.397 kb on - strand, within PP_1786at 2001.493 kb on + strand, within PP_1786at 2001.494 kb on - strand, within PP_1786at 2001.497 kb on + strand, within PP_1786at 2001.498 kb on - strand, within PP_1786at 2001.498 kb on - strand, within PP_1786at 2001.498 kb on - strand, within PP_1786at 2001.595 kb on + strandat 2001.721 kb on + strand, within PP_1786at 2001.728 kb on + strand, within PP_1786at 2001.950 kb on - strand, within PP_1786at 2002.200 kb on - strand, within PP_1786at 2002.222 kb on + strand, within PP_1786at 2002.377 kb on - strand, within PP_1786at 2002.448 kb on + strand, within PP_1786at 2002.448 kb on + strand, within PP_1786at 2002.448 kb on + strand, within PP_1786at 2002.455 kb on - strand, within PP_1786at 2002.473 kb on - strand, within PP_1786at 2002.516 kb on + strand, within PP_1786at 2002.517 kb on - strand, within PP_1786at 2002.533 kb on - strand, within PP_1786at 2002.657 kb on + strand, within PP_1786at 2002.705 kb on + strand, within PP_1786at 2002.743 kb on - strand, within PP_1786at 2002.753 kb on - strand, within PP_1786at 2002.769 kb on - strand, within PP_1786at 2002.946 kb on - strand, within PP_1786at 2002.952 kb on + strand, within PP_1786at 2002.968 kb on + strand, within PP_1786at 2003.006 kb on + strand, within PP_1786at 2003.010 kb on - strand, within PP_1786at 2003.091 kb on - strand, within PP_1786at 2003.169 kb on - strandat 2003.269 kb on + strandat 2003.305 kb on + strandat 2003.316 kb on - strandat 2003.343 kb on + strandat 2003.347 kb on - strandat 2003.356 kb on - strandat 2003.363 kb on - strandat 2003.453 kb on + strandat 2003.453 kb on + strandat 2003.672 kb on - strand, within PP_1787at 2003.770 kb on + strand, within PP_1787at 2003.892 kb on + strand, within PP_1787at 2004.070 kb on - strand, within PP_1787at 2004.113 kb on - strand, within PP_1787at 2004.139 kb on + strand, within PP_1787at 2004.255 kb on - strand, within PP_1787at 2004.335 kb on + strand, within PP_1787

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
remove
1,999,472 - +1.8
1,999,491 - +0.7
1,999,578 + +1.5
1,999,579 - +2.4
1,999,579 - +1.7
1,999,602 - +0.2
1,999,694 + +0.2
1,999,694 + +0.2
1,999,785 + -0.3
1,999,785 + +0.6
1,999,795 + +0.1
1,999,795 + +0.4
1,999,796 - +1.5
1,999,796 - +1.7
1,999,800 + +0.9
1,999,800 + -1.0
1,999,819 + -3.0
1,999,907 - +1.8
1,999,977 + +1.3
1,999,998 + +0.4
2,000,047 - +1.7
2,000,068 + +1.2
2,000,068 + +1.7
2,000,088 + +0.9
2,000,088 + -1.2
2,000,088 + +0.8
2,000,113 + +0.1
2,000,205 + +2.4
2,000,205 + +1.8
2,000,205 + +1.5
2,000,206 - +1.1
2,000,438 - PP_1786 0.11 +0.8
2,000,488 + PP_1786 0.12 +1.3
2,000,489 - PP_1786 0.12 +1.6
2,000,526 + PP_1786 0.14 +1.9
2,000,526 + PP_1786 0.14 +2.1
2,000,617 + PP_1786 0.16 +1.3
2,000,617 + PP_1786 0.16 +1.4
2,000,619 + PP_1786 0.16 +1.8
2,000,619 + PP_1786 0.16 +0.9
2,000,638 + PP_1786 0.17 +2.4
2,000,644 + PP_1786 0.17 +1.8
2,000,680 - +3.4
2,000,705 + PP_1786 0.19 +1.6
2,000,705 + PP_1786 0.19 +2.8
2,000,705 + PP_1786 0.19 +1.4
2,000,706 - PP_1786 0.19 +0.3
2,000,804 + PP_1786 0.22 +0.7
2,000,804 + PP_1786 0.22 +1.7
2,000,804 + PP_1786 0.22 +2.3
2,000,804 + PP_1786 0.22 +1.6
2,000,804 + PP_1786 0.22 +1.9
2,000,804 + PP_1786 0.22 +1.4
2,000,804 + PP_1786 0.22 +2.6
2,000,805 - PP_1786 0.22 +1.5
2,000,827 + PP_1786 0.22 +1.8
2,000,841 - PP_1786 0.23 +1.7
2,000,956 + PP_1786 0.26 +2.3
2,000,956 + PP_1786 0.26 +1.1
2,001,093 - PP_1786 0.30 -0.0
2,001,093 - PP_1786 0.30 +0.8
2,001,093 - PP_1786 0.30 +1.3
2,001,114 - PP_1786 0.31 +0.9
2,001,114 - PP_1786 0.31 +1.9
2,001,134 + PP_1786 0.31 +1.4
2,001,134 + +3.0
2,001,135 - PP_1786 0.31 +1.7
2,001,135 - +1.4
2,001,214 - PP_1786 0.34 +1.5
2,001,233 - PP_1786 0.34 +1.2
2,001,234 + PP_1786 0.34 +2.3
2,001,396 + PP_1786 0.39 +1.6
2,001,397 - PP_1786 0.39 +1.6
2,001,397 - PP_1786 0.39 -0.5
2,001,493 + PP_1786 0.42 +0.9
2,001,494 - PP_1786 0.42 +1.0
2,001,497 + PP_1786 0.42 +1.4
2,001,498 - PP_1786 0.42 +1.8
2,001,498 - PP_1786 0.42 +1.1
2,001,498 - PP_1786 0.42 +2.4
2,001,595 + -0.9
2,001,721 + PP_1786 0.48 +2.3
2,001,728 + PP_1786 0.48 +1.0
2,001,950 - PP_1786 0.55 +2.1
2,002,200 - PP_1786 0.62 +2.2
2,002,222 + PP_1786 0.63 +1.9
2,002,377 - PP_1786 0.67 +2.3
2,002,448 + PP_1786 0.69 -0.4
2,002,448 + PP_1786 0.69 +2.1
2,002,448 + PP_1786 0.69 +2.2
2,002,455 - PP_1786 0.70 +2.1
2,002,473 - PP_1786 0.70 +2.9
2,002,516 + PP_1786 0.71 +1.6
2,002,517 - PP_1786 0.71 +0.6
2,002,533 - PP_1786 0.72 +2.6
2,002,657 + PP_1786 0.75 +2.1
2,002,705 + PP_1786 0.77 +1.4
2,002,743 - PP_1786 0.78 +3.0
2,002,753 - PP_1786 0.78 +0.6
2,002,769 - PP_1786 0.79 +2.2
2,002,946 - PP_1786 0.84 +2.3
2,002,952 + PP_1786 0.84 +2.5
2,002,968 + PP_1786 0.84 +1.5
2,003,006 + PP_1786 0.86 +1.7
2,003,010 - PP_1786 0.86 +1.1
2,003,091 - PP_1786 0.88 +0.8
2,003,169 - +2.4
2,003,269 + +2.3
2,003,305 + +2.3
2,003,316 - +0.6
2,003,343 + +2.0
2,003,347 - +1.5
2,003,356 - +2.0
2,003,363 - +1.7
2,003,453 + +2.2
2,003,453 + +1.6
2,003,672 - PP_1787 0.17 -0.3
2,003,770 + PP_1787 0.27 +0.5
2,003,892 + PP_1787 0.39 +0.6
2,004,070 - PP_1787 0.56 +1.0
2,004,113 - PP_1787 0.61 +0.1
2,004,139 + PP_1787 0.63 +0.7
2,004,255 - PP_1787 0.75 +1.6
2,004,335 + PP_1787 0.83 +1.0

Or see this region's nucleotide sequence