Strain Fitness in Pseudomonas putida KT2440 around PP_1774

Experiment: P. putida South MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1772 and PP_1773 are separated by 299 nucleotidesPP_1773 and PP_1774 overlap by 32 nucleotidesPP_1774 and PP_1775 are separated by 102 nucleotides PP_1772: PP_1772 - 30S ribosomal protein S1, at 1,979,331 to 1,981,061 _1772 PP_1773: PP_1773 - Integration host factor subunit beta, at 1,981,361 to 1,981,663 _1773 PP_1774: PP_1774 - conserved exported protein of unknown function, at 1,981,632 to 1,981,946 _1774 PP_1775: PP_1775 - Metallo-beta-lactamase family protein, at 1,982,049 to 1,983,482 _1775 Position (kb) 1981 1982Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1981.183 kb on - strandat 1981.221 kb on - strandat 1981.221 kb on - strandat 1981.224 kb on + strandat 1981.225 kb on - strandat 1981.225 kb on - strandat 1981.231 kb on + strandat 1981.271 kb on + strandat 1981.272 kb on - strandat 1981.360 kb on + strandat 1981.387 kb on + strandat 1981.387 kb on + strandat 1981.387 kb on + strandat 1981.388 kb on - strandat 1981.388 kb on - strandat 1981.726 kb on + strand, within PP_1774at 1981.727 kb on - strand, within PP_1774at 1981.727 kb on - strand, within PP_1774at 1981.945 kb on - strandat 1981.945 kb on - strandat 1981.963 kb on + strandat 1981.963 kb on + strandat 1981.964 kb on - strandat 1981.964 kb on - strandat 1981.964 kb on - strandat 1981.964 kb on - strandat 1981.966 kb on + strandat 1981.967 kb on - strandat 1981.982 kb on + strandat 1981.982 kb on + strandat 1981.983 kb on - strandat 1981.983 kb on - strandat 1981.983 kb on - strandat 1981.983 kb on - strandat 1982.007 kb on + strandat 1982.008 kb on - strandat 1982.008 kb on - strandat 1982.008 kb on - strandat 1982.010 kb on + strandat 1982.011 kb on - strandat 1982.011 kb on - strandat 1982.052 kb on + strandat 1982.304 kb on - strand, within PP_1775at 1982.359 kb on - strand, within PP_1775at 1982.359 kb on - strand, within PP_1775at 1982.401 kb on - strand, within PP_1775at 1982.423 kb on + strand, within PP_1775at 1982.424 kb on - strand, within PP_1775at 1982.487 kb on - strand, within PP_1775at 1982.526 kb on + strand, within PP_1775at 1982.527 kb on - strand, within PP_1775at 1982.527 kb on - strand, within PP_1775at 1982.540 kb on + strand, within PP_1775at 1982.569 kb on - strand, within PP_1775at 1982.569 kb on - strand, within PP_1775at 1982.664 kb on + strand, within PP_1775at 1982.796 kb on + strand, within PP_1775

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
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1,981,183 - -2.8
1,981,221 - -3.7
1,981,221 - -4.3
1,981,224 + -3.2
1,981,225 - +0.4
1,981,225 - -1.3
1,981,231 + -4.1
1,981,271 + -4.4
1,981,272 - -1.6
1,981,360 + -3.1
1,981,387 + -5.2
1,981,387 + -4.1
1,981,387 + -1.6
1,981,388 - -4.4
1,981,388 - -5.0
1,981,726 + PP_1774 0.30 -4.3
1,981,727 - PP_1774 0.30 -2.9
1,981,727 - PP_1774 0.30 -1.6
1,981,945 - -4.0
1,981,945 - -3.6
1,981,963 + -4.4
1,981,963 + -3.3
1,981,964 - -5.0
1,981,964 - -3.2
1,981,964 - -4.3
1,981,964 - -3.7
1,981,966 + -5.1
1,981,967 - -3.8
1,981,982 + -5.1
1,981,982 + -3.6
1,981,983 - -4.0
1,981,983 - +0.4
1,981,983 - -2.3
1,981,983 - -3.4
1,982,007 + -4.9
1,982,008 - -4.3
1,982,008 - -4.1
1,982,008 - -3.6
1,982,010 + -4.5
1,982,011 - -4.3
1,982,011 - -2.4
1,982,052 + -4.9
1,982,304 - PP_1775 0.18 +0.6
1,982,359 - PP_1775 0.22 -4.1
1,982,359 - PP_1775 0.22 -4.1
1,982,401 - PP_1775 0.25 -3.0
1,982,423 + PP_1775 0.26 -3.7
1,982,424 - PP_1775 0.26 -4.3
1,982,487 - PP_1775 0.31 -3.0
1,982,526 + PP_1775 0.33 +0.7
1,982,527 - PP_1775 0.33 -4.6
1,982,527 - PP_1775 0.33 -4.6
1,982,540 + PP_1775 0.34 -4.2
1,982,569 - PP_1775 0.36 -4.5
1,982,569 - PP_1775 0.36 -0.9
1,982,664 + PP_1775 0.43 -2.5
1,982,796 + PP_1775 0.52 -4.5

Or see this region's nucleotide sequence