Strain Fitness in Pseudomonas putida KT2440 around PP_1627

Experiment: P. putida South MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1626 and PP_1627 are separated by 160 nucleotidesPP_1627 and PP_1628 are separated by 55 nucleotidesPP_1628 and PP_1629 are separated by 103 nucleotides PP_1626: PP_1626 - DNA mismatch repair protein MutS, at 1,822,680 to 1,825,253 _1626 PP_1627: PP_1627 - conserved protein of unknown function, at 1,825,414 to 1,826,505 _1627 PP_1628: PP_1628 - NMN amidohydrolase, at 1,826,561 to 1,827,043 _1628 PP_1629: PP_1629 - Protein RecA, at 1,827,147 to 1,828,214 _1629 Position (kb) 1825 1826 1827Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1824.467 kb on + strand, within PP_1626at 1824.467 kb on + strand, within PP_1626at 1824.467 kb on + strand, within PP_1626at 1824.468 kb on - strand, within PP_1626at 1824.468 kb on - strand, within PP_1626at 1824.468 kb on - strand, within PP_1626at 1824.535 kb on + strand, within PP_1626at 1824.535 kb on + strand, within PP_1626at 1824.535 kb on + strand, within PP_1626at 1824.536 kb on - strand, within PP_1626at 1824.536 kb on - strand, within PP_1626at 1824.536 kb on - strand, within PP_1626at 1824.822 kb on + strand, within PP_1626at 1825.027 kb on + strandat 1825.028 kb on - strandat 1825.028 kb on - strandat 1825.154 kb on - strandat 1825.214 kb on - strandat 1825.263 kb on + strandat 1825.264 kb on - strandat 1825.264 kb on - strandat 1825.392 kb on + strandat 1825.392 kb on + strandat 1825.393 kb on - strandat 1825.393 kb on - strandat 1825.462 kb on + strandat 1825.463 kb on - strandat 1825.463 kb on - strandat 1825.466 kb on + strandat 1825.466 kb on + strandat 1825.467 kb on - strandat 1825.467 kb on - strandat 1825.492 kb on + strandat 1825.511 kb on - strandat 1825.511 kb on - strandat 1825.590 kb on + strand, within PP_1627at 1825.758 kb on + strand, within PP_1627at 1825.763 kb on + strand, within PP_1627at 1825.864 kb on + strand, within PP_1627at 1825.864 kb on + strandat 1825.864 kb on + strand, within PP_1627at 1825.864 kb on + strand, within PP_1627at 1825.932 kb on + strand, within PP_1627at 1825.933 kb on - strand, within PP_1627at 1826.014 kb on + strand, within PP_1627at 1826.014 kb on + strand, within PP_1627at 1826.015 kb on - strand, within PP_1627at 1826.015 kb on - strand, within PP_1627at 1826.031 kb on + strand, within PP_1627at 1826.032 kb on - strand, within PP_1627at 1826.032 kb on - strand, within PP_1627at 1826.032 kb on - strand, within PP_1627at 1826.107 kb on + strand, within PP_1627at 1826.125 kb on + strand, within PP_1627at 1826.125 kb on + strand, within PP_1627at 1826.125 kb on + strand, within PP_1627at 1826.125 kb on + strand, within PP_1627at 1826.273 kb on + strand, within PP_1627at 1826.274 kb on - strand, within PP_1627at 1826.312 kb on - strand, within PP_1627at 1826.338 kb on + strand, within PP_1627at 1826.339 kb on - strand, within PP_1627at 1826.528 kb on + strandat 1826.528 kb on + strandat 1826.529 kb on - strandat 1826.529 kb on - strandat 1826.575 kb on + strandat 1826.575 kb on + strandat 1826.576 kb on - strandat 1826.679 kb on + strand, within PP_1628at 1826.680 kb on - strand, within PP_1628at 1826.680 kb on - strand, within PP_1628at 1826.711 kb on + strand, within PP_1628at 1826.720 kb on + strand, within PP_1628at 1826.720 kb on + strand, within PP_1628at 1826.720 kb on + strandat 1826.720 kb on + strand, within PP_1628at 1826.721 kb on - strand, within PP_1628at 1827.024 kb on + strandat 1827.041 kb on + strandat 1827.098 kb on - strandat 1827.287 kb on + strand, within PP_1629at 1827.336 kb on + strand, within PP_1629at 1827.336 kb on + strand, within PP_1629at 1827.337 kb on - strand, within PP_1629at 1827.407 kb on + strand, within PP_1629at 1827.407 kb on + strand, within PP_1629at 1827.407 kb on + strand, within PP_1629at 1827.408 kb on - strand, within PP_1629at 1827.450 kb on + strand, within PP_1629at 1827.450 kb on + strand, within PP_1629

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
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1,824,467 + PP_1626 0.69 -1.3
1,824,467 + PP_1626 0.69 -4.5
1,824,467 + PP_1626 0.69 -2.9
1,824,468 - PP_1626 0.69 -1.1
1,824,468 - PP_1626 0.69 -2.2
1,824,468 - PP_1626 0.69 -1.1
1,824,535 + PP_1626 0.72 -2.3
1,824,535 + PP_1626 0.72 -3.5
1,824,535 + PP_1626 0.72 -2.8
1,824,536 - PP_1626 0.72 -0.4
1,824,536 - PP_1626 0.72 -0.5
1,824,536 - PP_1626 0.72 +0.2
1,824,822 + PP_1626 0.83 -1.4
1,825,027 + -4.2
1,825,028 - +0.1
1,825,028 - -2.3
1,825,154 - -4.0
1,825,214 - -3.0
1,825,263 + +1.2
1,825,264 - -2.0
1,825,264 - -0.3
1,825,392 + +1.2
1,825,392 + +1.2
1,825,393 - -4.4
1,825,393 - -5.3
1,825,462 + -3.9
1,825,463 - -4.3
1,825,463 - -4.9
1,825,466 + -4.7
1,825,466 + -4.2
1,825,467 - -4.7
1,825,467 - -4.0
1,825,492 + -2.9
1,825,511 - -5.0
1,825,511 - -4.6
1,825,590 + PP_1627 0.16 -4.5
1,825,758 + PP_1627 0.32 -2.6
1,825,763 + PP_1627 0.32 -1.9
1,825,864 + PP_1627 0.41 -1.9
1,825,864 + -0.9
1,825,864 + PP_1627 0.41 -3.6
1,825,864 + PP_1627 0.41 -3.8
1,825,932 + PP_1627 0.47 -2.0
1,825,933 - PP_1627 0.48 -4.3
1,826,014 + PP_1627 0.55 -4.6
1,826,014 + PP_1627 0.55 -4.4
1,826,015 - PP_1627 0.55 -4.2
1,826,015 - PP_1627 0.55 -3.2
1,826,031 + PP_1627 0.57 -3.5
1,826,032 - PP_1627 0.57 -4.7
1,826,032 - PP_1627 0.57 -5.1
1,826,032 - PP_1627 0.57 -4.5
1,826,107 + PP_1627 0.63 -4.4
1,826,125 + PP_1627 0.65 -4.0
1,826,125 + PP_1627 0.65 -4.1
1,826,125 + PP_1627 0.65 -4.1
1,826,125 + PP_1627 0.65 -1.9
1,826,273 + PP_1627 0.79 -4.8
1,826,274 - PP_1627 0.79 -1.2
1,826,312 - PP_1627 0.82 -1.7
1,826,338 + PP_1627 0.85 -3.9
1,826,339 - PP_1627 0.85 -0.2
1,826,528 + -1.3
1,826,528 + +0.4
1,826,529 - -2.4
1,826,529 - -3.4
1,826,575 + -0.6
1,826,575 + -0.5
1,826,576 - -1.3
1,826,679 + PP_1628 0.24 +1.0
1,826,680 - PP_1628 0.25 -1.6
1,826,680 - PP_1628 0.25 -2.1
1,826,711 + PP_1628 0.31 +1.0
1,826,720 + PP_1628 0.33 -0.5
1,826,720 + PP_1628 0.33 +1.2
1,826,720 + +1.4
1,826,720 + PP_1628 0.33 +0.4
1,826,721 - PP_1628 0.33 -4.0
1,827,024 + -0.5
1,827,041 + -1.9
1,827,098 - +0.4
1,827,287 + PP_1629 0.13 -0.6
1,827,336 + PP_1629 0.18 +0.2
1,827,336 + PP_1629 0.18 +0.4
1,827,337 - PP_1629 0.18 -2.0
1,827,407 + PP_1629 0.24 -0.4
1,827,407 + PP_1629 0.24 -0.7
1,827,407 + PP_1629 0.24 -2.3
1,827,408 - PP_1629 0.24 -1.9
1,827,450 + PP_1629 0.28 +0.2
1,827,450 + PP_1629 0.28 +0.5

Or see this region's nucleotide sequence