Strain Fitness in Pseudomonas putida KT2440 around PP_0564

Experiment: P. putida South MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0563 and PP_0564 are separated by 226 nucleotidesPP_0564 and PP_0565 are separated by 2 nucleotidesPP_0565 and PP_0566 are separated by 239 nucleotides PP_0563: PP_0563 - Response regulator, at 654,987 to 656,342 _0563 PP_0564: PP_0564 - conserved protein of unknown function, at 656,569 to 657,657 _0564 PP_0565: PP_0565 - putative enzyme, at 657,660 to 658,193 _0565 PP_0566: PP_0566 - translation-related factor, at 658,433 to 658,804 _0566 Position (kb) 656 657 658Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 655.624 kb on + strand, within PP_0563at 655.625 kb on - strand, within PP_0563at 655.625 kb on - strand, within PP_0563at 655.625 kb on - strand, within PP_0563at 655.645 kb on + strand, within PP_0563at 655.645 kb on + strand, within PP_0563at 655.645 kb on + strand, within PP_0563at 655.646 kb on - strand, within PP_0563at 655.646 kb on - strand, within PP_0563at 655.666 kb on - strand, within PP_0563at 655.702 kb on + strand, within PP_0563at 655.703 kb on - strand, within PP_0563at 655.703 kb on - strand, within PP_0563at 655.703 kb on - strand, within PP_0563at 655.703 kb on - strand, within PP_0563at 655.703 kb on - strand, within PP_0563at 655.803 kb on + strand, within PP_0563at 655.816 kb on + strand, within PP_0563at 655.817 kb on - strand, within PP_0563at 655.817 kb on - strand, within PP_0563at 655.817 kb on - strand, within PP_0563at 655.817 kb on - strand, within PP_0563at 656.110 kb on + strand, within PP_0563at 656.227 kb on + strandat 656.227 kb on + strandat 656.227 kb on + strandat 656.228 kb on - strandat 656.228 kb on - strandat 656.352 kb on - strandat 656.355 kb on + strandat 656.355 kb on + strandat 656.355 kb on + strandat 656.356 kb on - strandat 656.356 kb on - strandat 656.356 kb on - strandat 656.357 kb on + strandat 656.358 kb on - strandat 656.358 kb on - strandat 656.358 kb on - strandat 656.477 kb on + strandat 656.484 kb on - strandat 656.500 kb on + strandat 656.501 kb on - strandat 656.501 kb on - strandat 656.502 kb on + strandat 656.502 kb on + strandat 656.502 kb on + strandat 656.503 kb on - strandat 656.668 kb on + strandat 656.668 kb on + strandat 656.669 kb on - strandat 656.808 kb on + strand, within PP_0564at 656.808 kb on + strand, within PP_0564at 656.809 kb on - strand, within PP_0564at 656.833 kb on + strand, within PP_0564at 656.833 kb on + strand, within PP_0564at 656.834 kb on - strand, within PP_0564at 656.835 kb on + strand, within PP_0564at 656.835 kb on + strand, within PP_0564at 656.835 kb on + strand, within PP_0564at 656.835 kb on + strand, within PP_0564at 656.835 kb on + strand, within PP_0564at 656.836 kb on - strand, within PP_0564at 656.836 kb on - strand, within PP_0564at 656.836 kb on - strand, within PP_0564at 656.836 kb on - strand, within PP_0564at 656.836 kb on - strand, within PP_0564at 656.953 kb on + strand, within PP_0564at 656.954 kb on - strand, within PP_0564at 656.997 kb on + strand, within PP_0564at 657.177 kb on + strand, within PP_0564at 657.178 kb on - strand, within PP_0564at 657.184 kb on + strand, within PP_0564at 657.185 kb on - strand, within PP_0564at 657.187 kb on - strand, within PP_0564at 657.386 kb on - strand, within PP_0564at 657.599 kb on - strandat 657.665 kb on + strandat 657.665 kb on + strandat 657.743 kb on - strand, within PP_0565at 657.838 kb on + strand, within PP_0565at 657.848 kb on + strand, within PP_0565at 657.876 kb on + strand, within PP_0565at 658.000 kb on - strand, within PP_0565at 658.039 kb on - strand, within PP_0565at 658.086 kb on - strand, within PP_0565at 658.143 kb on + strandat 658.144 kb on - strandat 658.144 kb on - strandat 658.176 kb on + strandat 658.176 kb on + strandat 658.176 kb on + strandat 658.192 kb on - strandat 658.192 kb on - strandat 658.279 kb on + strandat 658.296 kb on + strandat 658.296 kb on + strandat 658.297 kb on - strandat 658.302 kb on + strandat 658.479 kb on - strand, within PP_0566

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
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655,624 + PP_0563 0.47 -0.1
655,625 - PP_0563 0.47 -0.2
655,625 - PP_0563 0.47 +0.0
655,625 - PP_0563 0.47 -1.6
655,645 + PP_0563 0.49 -1.0
655,645 + PP_0563 0.49 +0.1
655,645 + PP_0563 0.49 -1.3
655,646 - PP_0563 0.49 +0.1
655,646 - PP_0563 0.49 +0.1
655,666 - PP_0563 0.50 -2.4
655,702 + PP_0563 0.53 -0.1
655,703 - PP_0563 0.53 -1.0
655,703 - PP_0563 0.53 +0.2
655,703 - PP_0563 0.53 +0.5
655,703 - PP_0563 0.53 +0.2
655,703 - PP_0563 0.53 +0.4
655,803 + PP_0563 0.60 -1.5
655,816 + PP_0563 0.61 +0.8
655,817 - PP_0563 0.61 -3.4
655,817 - PP_0563 0.61 -0.5
655,817 - PP_0563 0.61 +0.6
655,817 - PP_0563 0.61 +0.2
656,110 + PP_0563 0.83 -1.6
656,227 + +0.8
656,227 + -0.8
656,227 + -1.3
656,228 - +0.9
656,228 - -0.3
656,352 - -0.1
656,355 + +1.0
656,355 + -0.1
656,355 + +1.0
656,356 - -0.4
656,356 - -1.2
656,356 - -1.5
656,357 + +2.0
656,358 - -1.2
656,358 - -0.4
656,358 - -0.2
656,477 + -0.8
656,484 - -3.7
656,500 + -1.0
656,501 - -0.3
656,501 - +0.7
656,502 + -1.0
656,502 + -0.3
656,502 + +0.6
656,503 - -1.7
656,668 + -1.2
656,668 + -0.7
656,669 - +0.2
656,808 + PP_0564 0.22 -0.9
656,808 + PP_0564 0.22 -1.4
656,809 - PP_0564 0.22 +0.5
656,833 + PP_0564 0.24 -1.4
656,833 + PP_0564 0.24 -2.2
656,834 - PP_0564 0.24 -0.5
656,835 + PP_0564 0.24 -2.8
656,835 + PP_0564 0.24 -0.7
656,835 + PP_0564 0.24 -2.9
656,835 + PP_0564 0.24 -1.1
656,835 + PP_0564 0.24 -2.3
656,836 - PP_0564 0.25 -0.7
656,836 - PP_0564 0.25 -1.7
656,836 - PP_0564 0.25 -2.0
656,836 - PP_0564 0.25 -0.7
656,836 - PP_0564 0.25 -0.3
656,953 + PP_0564 0.35 -1.3
656,954 - PP_0564 0.35 -1.1
656,997 + PP_0564 0.39 -0.5
657,177 + PP_0564 0.56 +0.8
657,178 - PP_0564 0.56 -1.2
657,184 + PP_0564 0.56 -1.4
657,185 - PP_0564 0.57 -1.4
657,187 - PP_0564 0.57 -1.4
657,386 - PP_0564 0.75 -1.0
657,599 - -1.8
657,665 + +1.3
657,665 + -1.4
657,743 - PP_0565 0.16 -0.1
657,838 + PP_0565 0.33 +1.2
657,848 + PP_0565 0.35 -1.0
657,876 + PP_0565 0.40 +1.0
658,000 - PP_0565 0.64 -0.7
658,039 - PP_0565 0.71 +0.5
658,086 - PP_0565 0.80 +1.1
658,143 + +0.0
658,144 - -1.0
658,144 - -0.7
658,176 + -0.1
658,176 + -0.8
658,176 + -3.0
658,192 - -1.5
658,192 - -0.3
658,279 + +0.1
658,296 + -0.4
658,296 + -0.0
658,297 - -1.9
658,302 + -1.0
658,479 - PP_0566 0.12 -0.8

Or see this region's nucleotide sequence