Strain Fitness in Pseudomonas putida KT2440 around PP_0388

Experiment: P. putida South MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0387 and PP_0388 are separated by 67 nucleotidesPP_0388 and PP_0389 are separated by 304 nucleotidesPP_0389 and PP_0390 are separated by 204 nucleotides PP_0387: PP_0387 - RNA polymerase, sigma 70 (sigma D) factor, at 471,084 to 472,934 _0387 PP_0388: PP_0388 - DNA primase, at 473,002 to 474,984 _0388 PP_0389: PP_0389 - 30S ribosomal protein S21, at 475,289 to 475,504 _0389 PP_0390: PP_0390 - tRNA N6-adenosine threonylcarbamoyltransferase, at 475,709 to 476,734 _0390 Position (kb) 473 474 475Strain fitness (log2 ratio) -1 0 1at 475.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
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475,126 - -1.2

Or see this region's nucleotide sequence