Experiment: P. putida South MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0245 and PP_0246 overlap by 44 nucleotides PP_0246 and PP_0247 are separated by 13 nucleotides PP_0247 and PP_0248 are separated by 97 nucleotides
PP_0245: PP_0245 - putative transcriptional accessory protein, at 298,540 to 301,125
_0245
PP_0246: PP_0246 - two-component system DNA-binding response transcriptional dual regulator, at 301,082 to 301,822
_0246
PP_0247: PP_0247 - Osmolarity sensor protein EnvZ, at 301,836 to 303,149
_0247
PP_0248: PP_0248 - Probable alpha-L-glutamate ligase, at 303,247 to 304,152
_0248
PP_0249: PP_0249 - conserved protein of unknown function, at 304,149 to 304,769
_0249
Position (kb) 301
302
303
304 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 300.843 kb on + strand, within PP_0245 at 300.866 kb on + strand, within PP_0245 at 300.867 kb on - strand at 300.867 kb on - strand at 300.888 kb on + strand at 300.889 kb on - strand at 300.943 kb on + strand at 300.943 kb on + strand at 300.943 kb on + strand at 300.943 kb on + strand at 300.944 kb on - strand at 300.944 kb on - strand at 300.944 kb on - strand at 300.945 kb on + strand at 300.946 kb on - strand at 300.946 kb on - strand at 300.946 kb on - strand at 301.078 kb on - strand at 301.078 kb on - strand at 301.185 kb on - strand, within PP_0246 at 301.403 kb on + strand, within PP_0246 at 301.527 kb on - strand, within PP_0246 at 301.761 kb on - strand at 301.761 kb on - strand at 301.787 kb on + strand at 301.787 kb on + strand at 301.788 kb on - strand at 301.932 kb on + strand at 301.933 kb on - strand at 301.972 kb on - strand, within PP_0247 at 301.972 kb on - strand, within PP_0247 at 302.004 kb on + strand, within PP_0247 at 302.005 kb on - strand, within PP_0247 at 302.005 kb on - strand, within PP_0247 at 302.058 kb on - strand, within PP_0247 at 302.058 kb on - strand, within PP_0247 at 302.106 kb on + strand, within PP_0247 at 302.106 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.119 kb on - strand, within PP_0247 at 302.119 kb on - strand, within PP_0247 at 302.119 kb on - strand, within PP_0247 at 302.241 kb on + strand, within PP_0247 at 302.448 kb on + strand, within PP_0247 at 302.448 kb on + strand, within PP_0247 at 302.448 kb on + strand, within PP_0247 at 302.449 kb on - strand, within PP_0247 at 302.449 kb on - strand, within PP_0247 at 302.731 kb on - strand, within PP_0247 at 302.731 kb on - strand, within PP_0247 at 302.874 kb on + strand, within PP_0247 at 302.874 kb on + strand, within PP_0247 at 302.874 kb on + strand, within PP_0247 at 302.874 kb on + strand, within PP_0247 at 302.874 kb on + strand, within PP_0247 at 302.874 kb on + strand, within PP_0247 at 302.875 kb on - strand, within PP_0247 at 302.875 kb on - strand, within PP_0247 at 302.875 kb on - strand, within PP_0247 at 302.875 kb on - strand, within PP_0247 at 302.875 kb on - strand, within PP_0247 at 302.901 kb on + strand, within PP_0247 at 302.902 kb on - strand, within PP_0247 at 302.902 kb on - strand, within PP_0247 at 303.137 kb on + strand at 303.185 kb on - strand at 303.200 kb on + strand at 303.562 kb on + strand, within PP_0248 at 303.562 kb on + strand, within PP_0248 at 303.617 kb on + strand, within PP_0248 at 303.617 kb on + strand, within PP_0248 at 303.618 kb on - strand, within PP_0248 at 303.818 kb on - strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.898 kb on + strand, within PP_0248 at 303.899 kb on - strand, within PP_0248 at 303.899 kb on - strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.938 kb on + strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.939 kb on - strand, within PP_0248 at 303.958 kb on + strand, within PP_0248 at 303.958 kb on + strand, within PP_0248 at 303.958 kb on + strand, within PP_0248 at 303.958 kb on + strand, within PP_0248 at 303.959 kb on - strand, within PP_0248 at 303.959 kb on - strand, within PP_0248 at 303.959 kb on - strand, within PP_0248 at 304.040 kb on + strand, within PP_0248 at 304.041 kb on - strand, within PP_0248 at 304.116 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 0.1 remove 300,843 + PP_0245 0.89 -0.6 300,866 + PP_0245 0.90 +1.5 300,867 - -2.0 300,867 - -0.2 300,888 + +0.3 300,889 - +0.3 300,943 + -0.0 300,943 + +0.6 300,943 + +0.8 300,943 + +0.2 300,944 - -0.2 300,944 - -0.8 300,944 - -1.2 300,945 + +1.1 300,946 - -3.4 300,946 - -2.5 300,946 - -2.2 301,078 - +1.4 301,078 - +3.0 301,185 - PP_0246 0.14 +1.3 301,403 + PP_0246 0.43 +1.8 301,527 - PP_0246 0.60 +2.5 301,761 - +0.6 301,761 - +2.2 301,787 + +2.1 301,787 + +2.2 301,788 - +0.9 301,932 + +0.7 301,933 - +2.3 301,972 - PP_0247 0.10 +1.4 301,972 - PP_0247 0.10 +2.1 302,004 + PP_0247 0.13 +1.2 302,005 - PP_0247 0.13 +1.9 302,005 - PP_0247 0.13 +2.1 302,058 - PP_0247 0.17 +1.9 302,058 - PP_0247 0.17 +1.9 302,106 + PP_0247 0.21 +1.3 302,106 + PP_0247 0.21 +1.8 302,118 + PP_0247 0.21 +0.9 302,118 + PP_0247 0.21 +1.4 302,118 + PP_0247 0.21 +0.7 302,118 + PP_0247 0.21 +0.8 302,119 - PP_0247 0.22 +1.3 302,119 - PP_0247 0.22 +1.1 302,119 - PP_0247 0.22 +0.8 302,241 + PP_0247 0.31 +0.7 302,448 + PP_0247 0.47 +0.7 302,448 + PP_0247 0.47 +2.6 302,448 + PP_0247 0.47 +0.9 302,449 - PP_0247 0.47 +1.4 302,449 - PP_0247 0.47 +0.7 302,731 - PP_0247 0.68 +1.6 302,731 - PP_0247 0.68 +1.3 302,874 + PP_0247 0.79 +0.5 302,874 + PP_0247 0.79 -1.7 302,874 + PP_0247 0.79 +0.5 302,874 + PP_0247 0.79 +0.5 302,874 + PP_0247 0.79 +0.6 302,874 + PP_0247 0.79 +0.1 302,875 - PP_0247 0.79 +0.2 302,875 - PP_0247 0.79 +2.1 302,875 - PP_0247 0.79 +1.8 302,875 - PP_0247 0.79 +1.8 302,875 - PP_0247 0.79 +1.9 302,901 + PP_0247 0.81 +0.6 302,902 - PP_0247 0.81 +0.9 302,902 - PP_0247 0.81 +1.5 303,137 + -1.9 303,185 - -0.3 303,200 + -0.0 303,562 + PP_0248 0.35 +0.7 303,562 + PP_0248 0.35 -0.2 303,617 + PP_0248 0.41 -0.3 303,617 + PP_0248 0.41 -0.8 303,618 - PP_0248 0.41 -0.2 303,818 - PP_0248 0.63 +0.1 303,898 + PP_0248 0.72 +0.1 303,898 + PP_0248 0.72 -1.7 303,898 + PP_0248 0.72 -0.5 303,898 + PP_0248 0.72 -0.0 303,898 + PP_0248 0.72 +0.1 303,898 + PP_0248 0.72 -0.2 303,898 + PP_0248 0.72 -1.2 303,899 - PP_0248 0.72 +0.2 303,899 - PP_0248 0.72 +0.5 303,938 + PP_0248 0.76 +1.1 303,938 + PP_0248 0.76 -1.0 303,938 + PP_0248 0.76 -0.7 303,938 + PP_0248 0.76 -0.6 303,938 + PP_0248 0.76 -0.8 303,938 + PP_0248 0.76 -1.0 303,938 + PP_0248 0.76 -0.4 303,939 - PP_0248 0.76 -0.3 303,939 - PP_0248 0.76 -0.7 303,939 - PP_0248 0.76 +0.6 303,939 - PP_0248 0.76 -2.6 303,939 - PP_0248 0.76 +0.0 303,939 - PP_0248 0.76 -0.1 303,939 - PP_0248 0.76 +0.2 303,939 - PP_0248 0.76 -0.0 303,958 + PP_0248 0.78 +0.3 303,958 + PP_0248 0.78 -1.2 303,958 + PP_0248 0.78 -0.8 303,958 + PP_0248 0.78 +0.1 303,959 - PP_0248 0.79 +0.0 303,959 - PP_0248 0.79 +0.6 303,959 - PP_0248 0.79 +0.9 304,040 + PP_0248 0.88 -0.5 304,041 - PP_0248 0.88 +0.2 304,116 - -0.5
Or see this region's nucleotide sequence