Strain Fitness in Pseudomonas putida KT2440 around PP_0247

Experiment: P. putida South MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0245 and PP_0246 overlap by 44 nucleotidesPP_0246 and PP_0247 are separated by 13 nucleotidesPP_0247 and PP_0248 are separated by 97 nucleotides PP_0245: PP_0245 - putative transcriptional accessory protein, at 298,540 to 301,125 _0245 PP_0246: PP_0246 - two-component system DNA-binding response transcriptional dual regulator, at 301,082 to 301,822 _0246 PP_0247: PP_0247 - Osmolarity sensor protein EnvZ, at 301,836 to 303,149 _0247 PP_0248: PP_0248 - Probable alpha-L-glutamate ligase, at 303,247 to 304,152 _0248 PP_0249: PP_0249 - conserved protein of unknown function, at 304,149 to 304,769 _0249 Position (kb) 301 302 303 304Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 300.843 kb on + strand, within PP_0245at 300.866 kb on + strand, within PP_0245at 300.867 kb on - strandat 300.867 kb on - strandat 300.888 kb on + strandat 300.889 kb on - strandat 300.943 kb on + strandat 300.943 kb on + strandat 300.943 kb on + strandat 300.943 kb on + strandat 300.944 kb on - strandat 300.944 kb on - strandat 300.944 kb on - strandat 300.945 kb on + strandat 300.946 kb on - strandat 300.946 kb on - strandat 300.946 kb on - strandat 301.078 kb on - strandat 301.078 kb on - strandat 301.185 kb on - strand, within PP_0246at 301.403 kb on + strand, within PP_0246at 301.527 kb on - strand, within PP_0246at 301.761 kb on - strandat 301.761 kb on - strandat 301.787 kb on + strandat 301.787 kb on + strandat 301.788 kb on - strandat 301.932 kb on + strandat 301.933 kb on - strandat 301.972 kb on - strand, within PP_0247at 301.972 kb on - strand, within PP_0247at 302.004 kb on + strand, within PP_0247at 302.005 kb on - strand, within PP_0247at 302.005 kb on - strand, within PP_0247at 302.058 kb on - strand, within PP_0247at 302.058 kb on - strand, within PP_0247at 302.106 kb on + strand, within PP_0247at 302.106 kb on + strand, within PP_0247at 302.118 kb on + strand, within PP_0247at 302.118 kb on + strand, within PP_0247at 302.118 kb on + strand, within PP_0247at 302.118 kb on + strand, within PP_0247at 302.119 kb on - strand, within PP_0247at 302.119 kb on - strand, within PP_0247at 302.119 kb on - strand, within PP_0247at 302.241 kb on + strand, within PP_0247at 302.448 kb on + strand, within PP_0247at 302.448 kb on + strand, within PP_0247at 302.448 kb on + strand, within PP_0247at 302.449 kb on - strand, within PP_0247at 302.449 kb on - strand, within PP_0247at 302.731 kb on - strand, within PP_0247at 302.731 kb on - strand, within PP_0247at 302.874 kb on + strand, within PP_0247at 302.874 kb on + strand, within PP_0247at 302.874 kb on + strand, within PP_0247at 302.874 kb on + strand, within PP_0247at 302.874 kb on + strand, within PP_0247at 302.874 kb on + strand, within PP_0247at 302.875 kb on - strand, within PP_0247at 302.875 kb on - strand, within PP_0247at 302.875 kb on - strand, within PP_0247at 302.875 kb on - strand, within PP_0247at 302.875 kb on - strand, within PP_0247at 302.901 kb on + strand, within PP_0247at 302.902 kb on - strand, within PP_0247at 302.902 kb on - strand, within PP_0247at 303.137 kb on + strandat 303.185 kb on - strandat 303.200 kb on + strandat 303.562 kb on + strand, within PP_0248at 303.562 kb on + strand, within PP_0248at 303.617 kb on + strand, within PP_0248at 303.617 kb on + strand, within PP_0248at 303.618 kb on - strand, within PP_0248at 303.818 kb on - strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.899 kb on - strand, within PP_0248at 303.899 kb on - strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.958 kb on + strand, within PP_0248at 303.958 kb on + strand, within PP_0248at 303.958 kb on + strand, within PP_0248at 303.958 kb on + strand, within PP_0248at 303.959 kb on - strand, within PP_0248at 303.959 kb on - strand, within PP_0248at 303.959 kb on - strand, within PP_0248at 304.040 kb on + strand, within PP_0248at 304.041 kb on - strand, within PP_0248at 304.116 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
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300,843 + PP_0245 0.89 -0.6
300,866 + PP_0245 0.90 +1.5
300,867 - -2.0
300,867 - -0.2
300,888 + +0.3
300,889 - +0.3
300,943 + -0.0
300,943 + +0.6
300,943 + +0.8
300,943 + +0.2
300,944 - -0.2
300,944 - -0.8
300,944 - -1.2
300,945 + +1.1
300,946 - -3.4
300,946 - -2.5
300,946 - -2.2
301,078 - +1.4
301,078 - +3.0
301,185 - PP_0246 0.14 +1.3
301,403 + PP_0246 0.43 +1.8
301,527 - PP_0246 0.60 +2.5
301,761 - +0.6
301,761 - +2.2
301,787 + +2.1
301,787 + +2.2
301,788 - +0.9
301,932 + +0.7
301,933 - +2.3
301,972 - PP_0247 0.10 +1.4
301,972 - PP_0247 0.10 +2.1
302,004 + PP_0247 0.13 +1.2
302,005 - PP_0247 0.13 +1.9
302,005 - PP_0247 0.13 +2.1
302,058 - PP_0247 0.17 +1.9
302,058 - PP_0247 0.17 +1.9
302,106 + PP_0247 0.21 +1.3
302,106 + PP_0247 0.21 +1.8
302,118 + PP_0247 0.21 +0.9
302,118 + PP_0247 0.21 +1.4
302,118 + PP_0247 0.21 +0.7
302,118 + PP_0247 0.21 +0.8
302,119 - PP_0247 0.22 +1.3
302,119 - PP_0247 0.22 +1.1
302,119 - PP_0247 0.22 +0.8
302,241 + PP_0247 0.31 +0.7
302,448 + PP_0247 0.47 +0.7
302,448 + PP_0247 0.47 +2.6
302,448 + PP_0247 0.47 +0.9
302,449 - PP_0247 0.47 +1.4
302,449 - PP_0247 0.47 +0.7
302,731 - PP_0247 0.68 +1.6
302,731 - PP_0247 0.68 +1.3
302,874 + PP_0247 0.79 +0.5
302,874 + PP_0247 0.79 -1.7
302,874 + PP_0247 0.79 +0.5
302,874 + PP_0247 0.79 +0.5
302,874 + PP_0247 0.79 +0.6
302,874 + PP_0247 0.79 +0.1
302,875 - PP_0247 0.79 +0.2
302,875 - PP_0247 0.79 +2.1
302,875 - PP_0247 0.79 +1.8
302,875 - PP_0247 0.79 +1.8
302,875 - PP_0247 0.79 +1.9
302,901 + PP_0247 0.81 +0.6
302,902 - PP_0247 0.81 +0.9
302,902 - PP_0247 0.81 +1.5
303,137 + -1.9
303,185 - -0.3
303,200 + -0.0
303,562 + PP_0248 0.35 +0.7
303,562 + PP_0248 0.35 -0.2
303,617 + PP_0248 0.41 -0.3
303,617 + PP_0248 0.41 -0.8
303,618 - PP_0248 0.41 -0.2
303,818 - PP_0248 0.63 +0.1
303,898 + PP_0248 0.72 +0.1
303,898 + PP_0248 0.72 -1.7
303,898 + PP_0248 0.72 -0.5
303,898 + PP_0248 0.72 -0.0
303,898 + PP_0248 0.72 +0.1
303,898 + PP_0248 0.72 -0.2
303,898 + PP_0248 0.72 -1.2
303,899 - PP_0248 0.72 +0.2
303,899 - PP_0248 0.72 +0.5
303,938 + PP_0248 0.76 +1.1
303,938 + PP_0248 0.76 -1.0
303,938 + PP_0248 0.76 -0.7
303,938 + PP_0248 0.76 -0.6
303,938 + PP_0248 0.76 -0.8
303,938 + PP_0248 0.76 -1.0
303,938 + PP_0248 0.76 -0.4
303,939 - PP_0248 0.76 -0.3
303,939 - PP_0248 0.76 -0.7
303,939 - PP_0248 0.76 +0.6
303,939 - PP_0248 0.76 -2.6
303,939 - PP_0248 0.76 +0.0
303,939 - PP_0248 0.76 -0.1
303,939 - PP_0248 0.76 +0.2
303,939 - PP_0248 0.76 -0.0
303,958 + PP_0248 0.78 +0.3
303,958 + PP_0248 0.78 -1.2
303,958 + PP_0248 0.78 -0.8
303,958 + PP_0248 0.78 +0.1
303,959 - PP_0248 0.79 +0.0
303,959 - PP_0248 0.79 +0.6
303,959 - PP_0248 0.79 +0.9
304,040 + PP_0248 0.88 -0.5
304,041 - PP_0248 0.88 +0.2
304,116 - -0.5

Or see this region's nucleotide sequence