Strain Fitness in Pseudomonas putida KT2440 around PP_0042

Experiment: P. putida South MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0041 and PP_0042 are separated by 202 nucleotidesPP_0042 and PP_0043 are separated by 162 nucleotides PP_0041: PP_0041 - cadmium translocating P-type ATPase, at 43,527 to 45,524 _0041 PP_0042: PP_0042 - conserved exported protein of unknown function, at 45,727 to 46,050 _0042 PP_0043: PP_0043 - cation efflux system protein, at 46,213 to 49,374 _0043 Position (kb) 45 46 47Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 44.792 kb on + strand, within PP_0041at 44.793 kb on - strand, within PP_0041at 44.814 kb on + strandat 44.969 kb on + strand, within PP_0041at 44.970 kb on - strand, within PP_0041at 44.982 kb on + strand, within PP_0041at 44.982 kb on + strand, within PP_0041at 44.982 kb on + strand, within PP_0041at 44.982 kb on + strand, within PP_0041at 44.983 kb on - strand, within PP_0041at 44.983 kb on - strand, within PP_0041at 44.983 kb on - strand, within PP_0041at 44.983 kb on - strand, within PP_0041at 44.988 kb on + strand, within PP_0041at 44.989 kb on - strand, within PP_0041at 45.090 kb on + strand, within PP_0041at 45.091 kb on - strand, within PP_0041at 45.157 kb on + strand, within PP_0041at 45.293 kb on + strand, within PP_0041at 45.305 kb on + strand, within PP_0041at 45.332 kb on - strandat 45.332 kb on - strandat 45.332 kb on - strandat 45.343 kb on + strandat 45.344 kb on - strandat 45.344 kb on - strandat 45.344 kb on - strandat 45.344 kb on - strandat 45.473 kb on + strandat 45.474 kb on - strandat 45.525 kb on - strandat 45.525 kb on - strandat 45.595 kb on + strandat 45.602 kb on + strandat 45.602 kb on + strandat 45.646 kb on - strandat 45.815 kb on + strand, within PP_0042at 45.815 kb on + strand, within PP_0042at 45.815 kb on + strand, within PP_0042at 45.816 kb on - strand, within PP_0042at 45.828 kb on + strand, within PP_0042at 45.829 kb on - strand, within PP_0042at 45.868 kb on + strand, within PP_0042at 45.868 kb on + strand, within PP_0042at 45.869 kb on - strand, within PP_0042at 45.881 kb on + strand, within PP_0042at 45.882 kb on - strand, within PP_0042at 45.882 kb on - strand, within PP_0042at 45.962 kb on + strand, within PP_0042at 45.963 kb on - strand, within PP_0042at 46.089 kb on + strandat 46.090 kb on - strandat 46.214 kb on + strandat 46.215 kb on - strandat 46.219 kb on - strandat 46.268 kb on + strandat 46.268 kb on + strandat 46.268 kb on + strandat 46.283 kb on - strandat 46.525 kb on + strandat 46.526 kb on - strandat 46.526 kb on - strandat 46.779 kb on - strand, within PP_0043at 47.023 kb on + strand, within PP_0043at 47.024 kb on - strand, within PP_0043at 47.024 kb on - strand, within PP_0043

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
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44,792 + PP_0041 0.63 +0.3
44,793 - PP_0041 0.63 -0.4
44,814 + +0.4
44,969 + PP_0041 0.72 +0.1
44,970 - PP_0041 0.72 +0.1
44,982 + PP_0041 0.73 +0.4
44,982 + PP_0041 0.73 +0.2
44,982 + PP_0041 0.73 +0.3
44,982 + PP_0041 0.73 -2.4
44,983 - PP_0041 0.73 -0.4
44,983 - PP_0041 0.73 -0.3
44,983 - PP_0041 0.73 -0.0
44,983 - PP_0041 0.73 +1.0
44,988 + PP_0041 0.73 -0.5
44,989 - PP_0041 0.73 +0.2
45,090 + PP_0041 0.78 +0.2
45,091 - PP_0041 0.78 +0.1
45,157 + PP_0041 0.82 +0.7
45,293 + PP_0041 0.88 -0.5
45,305 + PP_0041 0.89 -0.9
45,332 - +1.2
45,332 - -1.9
45,332 - +0.3
45,343 + -0.8
45,344 - +0.6
45,344 - -1.6
45,344 - -1.2
45,344 - -0.5
45,473 + -1.0
45,474 - +0.4
45,525 - -1.2
45,525 - +1.1
45,595 + +0.9
45,602 + -0.7
45,602 + +0.2
45,646 - +0.4
45,815 + PP_0042 0.27 +0.0
45,815 + PP_0042 0.27 -0.2
45,815 + PP_0042 0.27 -0.9
45,816 - PP_0042 0.27 -3.3
45,828 + PP_0042 0.31 -1.8
45,829 - PP_0042 0.31 -5.1
45,868 + PP_0042 0.44 -0.1
45,868 + PP_0042 0.44 +0.6
45,869 - PP_0042 0.44 -4.2
45,881 + PP_0042 0.48 -0.4
45,882 - PP_0042 0.48 -1.7
45,882 - PP_0042 0.48 -1.2
45,962 + PP_0042 0.73 +0.1
45,963 - PP_0042 0.73 -3.1
46,089 + -0.9
46,090 - -4.3
46,214 + -0.7
46,215 - +0.4
46,219 - -0.2
46,268 + -0.5
46,268 + +0.3
46,268 + -0.3
46,283 - -1.0
46,525 + +0.7
46,526 - +0.2
46,526 - +0.5
46,779 - PP_0043 0.18 -0.3
47,023 + PP_0043 0.26 +0.4
47,024 - PP_0043 0.26 -1.2
47,024 - PP_0043 0.26 +0.6

Or see this region's nucleotide sequence