Experiment: P. putida South MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0041 and PP_0042 are separated by 202 nucleotides PP_0042 and PP_0043 are separated by 162 nucleotides
PP_0041: PP_0041 - cadmium translocating P-type ATPase, at 43,527 to 45,524
_0041
PP_0042: PP_0042 - conserved exported protein of unknown function, at 45,727 to 46,050
_0042
PP_0043: PP_0043 - cation efflux system protein, at 46,213 to 49,374
_0043
Position (kb) 45
46
47 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 44.792 kb on + strand, within PP_0041 at 44.793 kb on - strand, within PP_0041 at 44.814 kb on + strand at 44.969 kb on + strand, within PP_0041 at 44.970 kb on - strand, within PP_0041 at 44.982 kb on + strand, within PP_0041 at 44.982 kb on + strand, within PP_0041 at 44.982 kb on + strand, within PP_0041 at 44.982 kb on + strand, within PP_0041 at 44.983 kb on - strand, within PP_0041 at 44.983 kb on - strand, within PP_0041 at 44.983 kb on - strand, within PP_0041 at 44.983 kb on - strand, within PP_0041 at 44.988 kb on + strand, within PP_0041 at 44.989 kb on - strand, within PP_0041 at 45.090 kb on + strand, within PP_0041 at 45.091 kb on - strand, within PP_0041 at 45.157 kb on + strand, within PP_0041 at 45.293 kb on + strand, within PP_0041 at 45.305 kb on + strand, within PP_0041 at 45.332 kb on - strand at 45.332 kb on - strand at 45.332 kb on - strand at 45.343 kb on + strand at 45.344 kb on - strand at 45.344 kb on - strand at 45.344 kb on - strand at 45.344 kb on - strand at 45.473 kb on + strand at 45.474 kb on - strand at 45.525 kb on - strand at 45.525 kb on - strand at 45.595 kb on + strand at 45.602 kb on + strand at 45.602 kb on + strand at 45.646 kb on - strand at 45.815 kb on + strand, within PP_0042 at 45.815 kb on + strand, within PP_0042 at 45.815 kb on + strand, within PP_0042 at 45.816 kb on - strand, within PP_0042 at 45.828 kb on + strand, within PP_0042 at 45.829 kb on - strand, within PP_0042 at 45.868 kb on + strand, within PP_0042 at 45.868 kb on + strand, within PP_0042 at 45.869 kb on - strand, within PP_0042 at 45.881 kb on + strand, within PP_0042 at 45.882 kb on - strand, within PP_0042 at 45.882 kb on - strand, within PP_0042 at 45.962 kb on + strand, within PP_0042 at 45.963 kb on - strand, within PP_0042 at 46.089 kb on + strand at 46.090 kb on - strand at 46.214 kb on + strand at 46.215 kb on - strand at 46.219 kb on - strand at 46.268 kb on + strand at 46.268 kb on + strand at 46.268 kb on + strand at 46.283 kb on - strand at 46.525 kb on + strand at 46.526 kb on - strand at 46.526 kb on - strand at 46.779 kb on - strand, within PP_0043 at 47.023 kb on + strand, within PP_0043 at 47.024 kb on - strand, within PP_0043 at 47.024 kb on - strand, within PP_0043
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 0.1 remove 44,792 + PP_0041 0.63 +0.3 44,793 - PP_0041 0.63 -0.4 44,814 + +0.4 44,969 + PP_0041 0.72 +0.1 44,970 - PP_0041 0.72 +0.1 44,982 + PP_0041 0.73 +0.4 44,982 + PP_0041 0.73 +0.2 44,982 + PP_0041 0.73 +0.3 44,982 + PP_0041 0.73 -2.4 44,983 - PP_0041 0.73 -0.4 44,983 - PP_0041 0.73 -0.3 44,983 - PP_0041 0.73 -0.0 44,983 - PP_0041 0.73 +1.0 44,988 + PP_0041 0.73 -0.5 44,989 - PP_0041 0.73 +0.2 45,090 + PP_0041 0.78 +0.2 45,091 - PP_0041 0.78 +0.1 45,157 + PP_0041 0.82 +0.7 45,293 + PP_0041 0.88 -0.5 45,305 + PP_0041 0.89 -0.9 45,332 - +1.2 45,332 - -1.9 45,332 - +0.3 45,343 + -0.8 45,344 - +0.6 45,344 - -1.6 45,344 - -1.2 45,344 - -0.5 45,473 + -1.0 45,474 - +0.4 45,525 - -1.2 45,525 - +1.1 45,595 + +0.9 45,602 + -0.7 45,602 + +0.2 45,646 - +0.4 45,815 + PP_0042 0.27 +0.0 45,815 + PP_0042 0.27 -0.2 45,815 + PP_0042 0.27 -0.9 45,816 - PP_0042 0.27 -3.3 45,828 + PP_0042 0.31 -1.8 45,829 - PP_0042 0.31 -5.1 45,868 + PP_0042 0.44 -0.1 45,868 + PP_0042 0.44 +0.6 45,869 - PP_0042 0.44 -4.2 45,881 + PP_0042 0.48 -0.4 45,882 - PP_0042 0.48 -1.7 45,882 - PP_0042 0.48 -1.2 45,962 + PP_0042 0.73 +0.1 45,963 - PP_0042 0.73 -3.1 46,089 + -0.9 46,090 - -4.3 46,214 + -0.7 46,215 - +0.4 46,219 - -0.2 46,268 + -0.5 46,268 + +0.3 46,268 + -0.3 46,283 - -1.0 46,525 + +0.7 46,526 - +0.2 46,526 - +0.5 46,779 - PP_0043 0.18 -0.3 47,023 + PP_0043 0.26 +0.4 47,024 - PP_0043 0.26 -1.2 47,024 - PP_0043 0.26 +0.6
Or see this region's nucleotide sequence