Strain Fitness in Pseudomonas putida KT2440 around PP_0956

Experiment: P. putida South MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0954 and PP_0955 overlap by 14 nucleotidesPP_0955 and PP_0956 are separated by 8 nucleotidesPP_0956 and PP_0957 are separated by 12 nucleotides PP_0954: PP_0954 - conserved exported protein of unknown function, at 1,096,962 to 1,097,486 _0954 PP_0955: PP_0955 - conserved exported protein of unknown function, at 1,097,473 to 1,098,045 _0955 PP_0956: PP_0956 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 1,098,054 to 1,098,578 _0956 PP_0957: PP_0957 - D-arabinose 5-phosphate isomerase, at 1,098,591 to 1,099,565 _0957 Position (kb) 1098 1099Strain fitness (log2 ratio) -2 -1 0 1at 1097.607 kb on - strand, within PP_0955at 1098.694 kb on - strand, within PP_0957at 1098.786 kb on - strand, within PP_0957

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 0.1
remove
1,097,607 - PP_0955 0.23 -2.5
1,098,694 - PP_0957 0.11 +0.5
1,098,786 - PP_0957 0.20 -0.7

Or see this region's nucleotide sequence