Strain Fitness in Pseudomonas putida KT2440 around PP_5086

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
5,808,515	+		PP_5085	0.39	+0.9
5,808,515	+		PP_5085	0.39	+0.6
5,808,515	+		PP_5085	0.39	+1.6
5,808,516	-		PP_5085	0.39	+0.4
5,808,516	-		PP_5085	0.39	-0.8
5,808,588	+		PP_5085	0.45	+1.2
5,808,589	-		PP_5085	0.45	-0.3
5,808,589	-		PP_5085	0.45	+1.6
5,808,628	+		PP_5085	0.48	-0.9
5,808,628	+		PP_5085	0.48	+1.2
5,808,628	+		PP_5085	0.48	-0.2
5,808,671	+		PP_5085	0.51	+0.6
5,808,671	+		PP_5085	0.51	-0.1
5,808,672	-		PP_5085	0.51	+0.0
5,808,672	-		PP_5085	0.51	-0.8
5,808,672	-		PP_5085	0.51	+0.7
5,808,797	-		PP_5085	0.61	+0.6
5,808,847	+		PP_5085	0.65	-0.9
5,809,114	-		PP_5085	0.86	+1.1
5,809,119	+		PP_5085	0.87	+0.6
5,809,119	+		PP_5085	0.87	+0.5
5,809,120	-		PP_5085	0.87	+1.8
5,809,307	+				+1.3
5,809,307	+				+2.2
5,809,307	+				+0.6
5,809,307	+				+0.2
5,809,307	+				-1.2
5,809,308	-				-0.2
5,809,308	-				-1.7
5,809,308	-				+0.2
5,809,308	-				+0.1
5,809,333	-				+0.1
5,809,386	+				-1.2
5,809,391	+				+2.2
5,809,400	-				-1.7
5,809,400	-				+0.3
5,809,420	+				-1.5
5,809,420	+				+0.1
5,809,421	-				-1.1
5,809,702	+		PP_5086	0.31	-1.7
5,809,711	+		PP_5086	0.32	-0.7
5,809,763	+		PP_5086	0.39	+0.8
5,809,841	+		PP_5086	0.49	-1.4
5,809,841	+		PP_5086	0.49	-2.0
5,809,841	+		PP_5086	0.49	-2.6
5,809,841	+		PP_5086	0.49	+0.4
5,809,842	-		PP_5086	0.49	-2.2
5,809,846	+		PP_5086	0.49	+0.2
5,809,846	+		PP_5086	0.49	+2.0
5,809,847	-		PP_5086	0.50	-0.2
5,809,883	-		PP_5086	0.54	-1.7
5,809,920	+		PP_5086	0.59	-0.7
5,809,920	+		PP_5086	0.59	+0.4
5,809,920	+		PP_5086	0.59	-0.1
5,809,921	-		PP_5086	0.59	-2.2
5,809,921	-		PP_5086	0.59	-1.2
5,809,921	-		PP_5086	0.59	-1.9
5,809,944	+		PP_5086	0.62	-0.3
5,809,944	+		PP_5086	0.62	-0.7
5,809,944	+		PP_5086	0.62	+0.1
5,809,944	+		PP_5086	0.62	+0.2
5,809,945	-		PP_5086	0.62	-4.3
5,809,945	-		PP_5086	0.62	-0.9
5,809,945	-		PP_5086	0.62	-4.4
5,809,945	-		PP_5086	0.62	-2.6
5,809,945	-		PP_5086	0.62	-2.1
5,809,954	+		PP_5086	0.64	-1.2
5,810,037	+		PP_5086	0.74	-0.1
5,810,050	+		PP_5086	0.76	-0.1
5,810,051	-		PP_5086	0.76	-1.0
5,810,051	-		PP_5086	0.76	-2.3
5,810,633	-				-0.0
5,810,651	-				+0.9