Strain Fitness in Pseudomonas putida KT2440 around PP_4892

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
5,560,713	-				+2.2
5,560,713	-				+1.2
5,560,713	-				+1.4
5,560,713	-				+0.6
5,560,713	-				+0.8
5,560,752	+				+0.9
5,560,752	+				-0.0
5,560,886	+		PP_4891	0.10	-2.2
5,560,935	-		PP_4891	0.16	-1.3
5,560,935	-		PP_4891	0.16	+0.9
5,560,946	+		PP_4891	0.17	-2.2
5,560,946	+		PP_4891	0.17	-3.2
5,560,946	+		PP_4891	0.17	-1.5
5,560,946	+		PP_4891	0.17	+0.5
5,560,946	+		PP_4891	0.17	-0.8
5,560,947	-		PP_4891	0.17	-1.9
5,560,947	-		PP_4891	0.17	-0.4
5,560,947	-		PP_4891	0.17	-0.8
5,560,947	-		PP_4891	0.17	-0.8
5,560,950	+		PP_4891	0.17	-1.5
5,560,951	-		PP_4891	0.18	-0.9
5,560,951	-		PP_4891	0.18	-2.2
5,560,951	-		PP_4891	0.18	-0.5
5,561,000	+		PP_4891	0.23	-1.5
5,561,001	-		PP_4891	0.23	-2.8
5,561,278	-		PP_4891	0.55	-1.4
5,561,278	-		PP_4891	0.55	-0.1
5,561,366	+		PP_4891	0.65	-1.8
5,561,367	-		PP_4891	0.65	-2.2
5,561,367	-		PP_4891	0.65	-1.6
5,561,504	+		PP_4891	0.81	-1.9
5,561,597	+				-1.5
5,561,597	+				-1.6
5,561,597	+				-2.3
5,561,597	+				-0.8
5,561,597	+				-0.2
5,561,597	+				-0.5
5,561,598	-				-2.6
5,561,598	-				-0.4
5,561,598	-				+0.8
5,561,658	+				-1.3
5,561,658	+				-2.8
5,561,658	+				-2.5
5,561,658	+				-0.3
5,561,658	+				-1.6
5,561,659	-				-0.5
5,561,681	+				-2.7
5,561,684	+				-0.7
5,561,685	-				-0.4
5,561,815	+		PP_4892	0.12	-3.0
5,561,816	-		PP_4892	0.12	-1.3
5,561,816	-		PP_4892	0.12	-2.4
5,561,816	-		PP_4892	0.12	-2.5
5,561,873	-		PP_4892	0.17	-2.9
5,561,873	-		PP_4892	0.17	-2.9
5,561,896	+		PP_4892	0.19	-0.8
5,561,933	-		PP_4892	0.22	+0.5
5,562,065	-		PP_4892	0.33	-2.1
5,562,065	-		PP_4892	0.33	-0.6
5,562,163	-		PP_4892	0.41	-1.8
5,562,163	-		PP_4892	0.41	-2.8
5,562,196	+		PP_4892	0.43	-1.1
5,562,196	+		PP_4892	0.43	-1.3
5,562,196	+		PP_4892	0.43	-1.6
5,562,197	-		PP_4892	0.44	-2.4
5,562,197	-		PP_4892	0.44	-3.1
5,562,197	-		PP_4892	0.44	-2.1
5,562,382	+		PP_4892	0.59	-2.2
5,562,383	-		PP_4892	0.59	-0.8
5,562,448	+		PP_4892	0.64	-0.6
5,562,448	+		PP_4892	0.64	-1.9
5,562,448	+		PP_4892	0.64	-2.3
5,562,502	+		PP_4892	0.69	-2.5
5,562,502	+		PP_4892	0.69	-0.1
5,562,503	-		PP_4892	0.69	-1.3
5,562,532	+		PP_4892	0.71	-1.3
5,562,532	+		PP_4892	0.71	-0.8
5,562,532	+				+2.8
5,562,533	-		PP_4892	0.71	+0.5
5,562,533	-		PP_4892	0.71	-2.1
5,562,533	-		PP_4892	0.71	-0.6
5,562,533	-		PP_4892	0.71	-2.6
5,562,533	-		PP_4892	0.71	-0.8
5,562,534	+		PP_4892	0.71	-2.2
5,562,536	-		PP_4892	0.71	-2.4
5,562,536	-		PP_4892	0.71	-1.4
5,562,583	+		PP_4892	0.75	-2.1
5,562,583	+		PP_4892	0.75	+1.6
5,562,584	-		PP_4892	0.75	-0.8
5,562,584	-		PP_4892	0.75	-1.8
5,562,584	-		PP_4892	0.75	-1.1
5,562,584	-		PP_4892	0.75	-0.5
5,562,865	+				-2.4
5,563,297	+		PP_4893	0.27	+0.5
5,563,297	+		PP_4893	0.27	-0.2
5,563,298	-		PP_4893	0.27	+1.3
5,563,298	-		PP_4893	0.27	+0.1
5,563,298	-		PP_4893	0.27	-0.1
5,563,298	-		PP_4893	0.27	-0.5
5,563,298	-		PP_4893	0.27	-0.2
5,563,485	+		PP_4893	0.41	-1.8
5,563,486	-		PP_4893	0.42	+0.9
5,563,576	+		PP_4893	0.48	+0.6
5,563,576	+		PP_4893	0.48	-0.5
5,563,576	+		PP_4893	0.48	+1.1
5,563,577	-		PP_4893	0.49	+0.8
5,563,628	+		PP_4893	0.52	+0.7
5,563,628	+		PP_4893	0.52	+1.2
5,563,628	+		PP_4893	0.52	-0.8
5,563,629	-		PP_4893	0.53	+0.0
5,563,629	-		PP_4893	0.53	-0.4
5,563,629	-		PP_4893	0.53	+0.1
5,563,629	-		PP_4893	0.53	+0.0
5,563,629	-		PP_4893	0.53	+0.2
5,563,629	-		PP_4893	0.53	-0.0
5,563,630	+		PP_4893	0.53	+3.1
5,563,630	+		PP_4893	0.53	+0.9
5,563,630	+		PP_4893	0.53	+0.6
5,563,631	-		PP_4893	0.53	-0.0
5,563,731	+		PP_4893	0.60	+2.0
5,563,731	+		PP_4893	0.60	+0.2
5,563,731	+		PP_4893	0.60	+1.0
5,563,732	-		PP_4893	0.60	+0.8
5,563,733	+		PP_4893	0.61	+0.3
5,563,733	+		PP_4893	0.61	-0.2
5,563,734	-		PP_4893	0.61	+0.1
5,563,734	-		PP_4893	0.61	-1.0
5,563,734	-		PP_4893	0.61	-0.2