Strain Fitness in Pseudomonas putida KT2440 around PP_4544

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
5,160,282	+		PP_4543	0.36	+1.2
5,160,282	+		PP_4543	0.36	+0.1
5,160,283	-		PP_4543	0.36	-1.2
5,160,283	-		PP_4543	0.36	-0.2
5,160,294	+		PP_4543	0.37	-0.5
5,160,294	+		PP_4543	0.37	-1.1
5,160,294	+		PP_4543	0.37	+1.2
5,160,294	+		PP_4543	0.37	-2.1
5,160,295	-		PP_4543	0.37	+0.2
5,160,299	+		PP_4543	0.38	+0.9
5,160,299	+		PP_4543	0.38	-0.6
5,160,299	+		PP_4543	0.38	+1.3
5,160,299	+		PP_4543	0.38	-0.6
5,160,299	+		PP_4543	0.38	-3.7
5,160,299	+		PP_4543	0.38	+0.3
5,160,299	+		PP_4543	0.38	+0.2
5,160,299	+		PP_4543	0.38	+0.5
5,160,300	-		PP_4543	0.38	+0.1
5,160,300	-		PP_4543	0.38	-0.8
5,160,300	-		PP_4543	0.38	-0.2
5,160,300	-		PP_4543	0.38	+0.3
5,160,300	-		PP_4543	0.38	+0.8
5,160,300	-		PP_4543	0.38	-0.0
5,160,300	-		PP_4543	0.38	-0.5
5,160,300	-		PP_4543	0.38	+0.4
5,160,300	-		PP_4543	0.38	+0.2
5,160,580	-		PP_4543	0.61	+0.2
5,160,580	-		PP_4543	0.61	-0.8
5,160,685	-		PP_4543	0.69	-3.1
5,160,738	+		PP_4543	0.74	-1.1
5,160,738	+		PP_4543	0.74	+0.1
5,160,739	-		PP_4543	0.74	-1.9
5,160,739	-		PP_4543	0.74	+0.5
5,160,739	-		PP_4543	0.74	-0.6
5,160,739	-				+2.5
5,160,739	-		PP_4543	0.74	+0.3
5,160,785	+		PP_4543	0.78	+0.0
5,160,786	-		PP_4543	0.78	+0.7
5,161,001	+				-0.3
5,161,002	-				-0.4
5,161,055	+				+0.7
5,161,055	+				+0.2
5,161,055	+				+0.7
5,161,056	-				-2.7
5,161,063	+				+0.2
5,161,063	+				+1.0
5,161,064	-				-0.1
5,161,068	-				+0.7
5,161,082	+				-2.0
5,161,082	+				-0.4
5,161,093	+				+0.6
5,161,093	+				-0.2
5,161,094	-				+0.3
5,161,094	-				-0.0
5,161,094	-				+0.3
5,161,117	-				-0.2
5,161,141	+				+0.2
5,161,152	+				-0.3
5,161,232	+				-1.5
5,161,232	+				+0.7
5,161,233	-				-0.6
5,161,233	-				-0.7
5,161,233	-				-1.3
5,161,233	-				+0.5
5,161,233	-				-0.6
5,161,253	+				-0.7
5,161,261	+				-0.7
5,161,261	+				-0.6
5,161,368	+		PP_4544	0.11	-0.8
5,161,509	+		PP_4544	0.22	-1.4
5,161,570	+		PP_4544	0.27	-2.7
5,161,571	-		PP_4544	0.27	-0.6
5,161,590	+		PP_4544	0.29	+0.5
5,161,591	-		PP_4544	0.29	+0.6
5,161,591	-		PP_4544	0.29	-0.1
5,161,591	-				+0.9
5,161,683	+		PP_4544	0.36	+0.5
5,161,683	+		PP_4544	0.36	-0.3
5,161,683	+		PP_4544	0.36	+1.3
5,161,684	-		PP_4544	0.36	-0.6
5,161,684	-		PP_4544	0.36	-0.9
5,161,684	-		PP_4544	0.36	-0.0
5,161,719	+		PP_4544	0.39	-0.6
5,161,719	+		PP_4544	0.39	+0.1
5,161,848	+		PP_4544	0.49	+0.3
5,161,848	+		PP_4544	0.49	+0.9
5,161,848	+		PP_4544	0.49	+1.3
5,161,848	+		PP_4544	0.49	-0.3
5,161,849	-		PP_4544	0.49	-0.0
5,161,849	-		PP_4544	0.49	+0.4
5,161,849	-		PP_4544	0.49	+1.5
5,161,896	+		PP_4544	0.53	-0.4
5,161,897	-		PP_4544	0.53	+0.7
5,161,897	-		PP_4544	0.53	+0.6
5,161,935	+		PP_4544	0.56	-0.2
5,161,936	-		PP_4544	0.56	-0.3
5,161,936	-		PP_4544	0.56	-0.2
5,161,957	-		PP_4544	0.58	-0.6
5,161,957	-		PP_4544	0.58	-1.9
5,162,025	+		PP_4544	0.64	+0.4
5,162,025	+		PP_4544	0.64	-0.1
5,162,025	+		PP_4544	0.64	+0.5
5,162,025	+		PP_4544	0.64	-0.6
5,162,025	+		PP_4544	0.64	+0.0
5,162,025	+		PP_4544	0.64	-0.2
5,162,025	+		PP_4544	0.64	-0.6
5,162,026	-		PP_4544	0.64	-0.5
5,162,026	-		PP_4544	0.64	-0.7
5,162,026	-		PP_4544	0.64	+0.1
5,162,026	-		PP_4544	0.64	-0.1
5,162,026	-		PP_4544	0.64	-0.6
5,162,026	-		PP_4544	0.64	+0.5
5,162,026	-		PP_4544	0.64	-0.6
5,162,026	-		PP_4544	0.64	+0.0
5,162,026	-		PP_4544	0.64	-2.2
5,162,151	+		PP_4544	0.74	+0.1
5,162,160	+		PP_4544	0.74	+0.4
5,162,160	+				+0.5
5,162,161	-		PP_4544	0.75	-1.9
5,162,247	+		PP_4544	0.81	+0.4
5,162,247	+		PP_4544	0.81	-1.0
5,162,317	-		PP_4544	0.87	-1.6
5,162,352	+		PP_4544	0.90	+0.3
5,162,476	-				-0.4
5,162,597	-				+0.3
5,162,625	+				-0.4
5,162,625	+				+0.3
5,162,626	-				-1.2
5,162,701	+				+1.8
5,162,701	+				-0.3
5,162,701	+				-0.1
5,162,769	+				+0.9
5,162,770	-				+0.9
5,162,806	+		PP_4545	0.11	+0.3
5,162,807	-		PP_4545	0.11	+1.2
5,163,020	+		PP_4545	0.29	+1.3
5,163,020	+		PP_4545	0.29	+1.4
5,163,021	-		PP_4545	0.29	+0.5
5,163,021	-		PP_4545	0.29	+0.4
5,163,021	-		PP_4545	0.29	-0.2
5,163,291	-		PP_4545	0.52	+0.2
5,163,295	+		PP_4545	0.53	+1.0
5,163,296	-		PP_4545	0.53	+0.8