Strain Fitness in Pseudomonas putida KT2440 around PP_4152

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
4,690,352	+		PP_4150	0.77	+0.2
4,690,352	+		PP_4150	0.77	+0.1
4,690,352	+		PP_4150	0.77	+0.4
4,690,497	-		PP_4150	0.86	+1.1
4,690,552	+		PP_4150	0.89	-0.1
4,690,678	+				+0.2
4,690,678	+				+0.8
4,690,679	-				+1.6
4,690,679	-				-1.9
4,690,723	+				+0.3
4,690,724	-				-1.1
4,690,726	+				+0.8
4,690,726	+				-0.1
4,690,727	-				-0.3
4,690,727	-				-0.1
4,690,727	-				+0.9
4,690,806	-				-1.5
4,691,034	-		PP_4151	0.35	-1.0
4,691,034	-		PP_4151	0.35	-0.7
4,691,055	-		PP_4151	0.40	-0.0
4,691,055	-		PP_4151	0.40	-1.0
4,691,089	-		PP_4151	0.47	+0.0
4,691,089	-		PP_4151	0.47	-0.4
4,691,089	-		PP_4151	0.47	+0.3
4,691,124	-		PP_4151	0.54	+1.1
4,691,152	-		PP_4151	0.60	-1.9
4,691,362	+				-0.5
4,691,362	+				+0.3
4,691,363	-				+0.3
4,691,364	+				-3.2
4,691,364	+				+1.5
4,691,365	-				+0.2
4,691,365	-				-1.2
4,691,377	+				-1.0
4,691,377	+				-0.2
4,691,378	-				-1.8
4,691,382	+				-0.9
4,691,383	-				-0.1
4,691,416	+		PP_4152	0.14	-1.3
4,691,417	-		PP_4152	0.14	-0.6
4,691,433	+		PP_4152	0.17	+0.4
4,691,433	+		PP_4152	0.17	-0.4
4,691,434	-		PP_4152	0.17	-0.2
4,691,434	-		PP_4152	0.17	-0.4
4,691,434	-		PP_4152	0.17	-2.7
4,691,609	+		PP_4152	0.47	-0.3
4,691,610	-		PP_4152	0.47	-1.7
4,691,803	+		PP_4152	0.81	-1.0
4,691,803	+		PP_4152	0.81	-2.0
4,691,830	+		PP_4152	0.86	+0.3
4,691,830	+		PP_4152	0.86	-0.9
4,691,830	+		PP_4152	0.86	-1.0
4,691,830	+		PP_4152	0.86	-1.4
4,691,831	-		PP_4152	0.86	-0.2
4,691,831	-		PP_4152	0.86	-1.4
4,691,838	+		PP_4152	0.87	+0.1
4,691,839	-		PP_4152	0.87	-1.2
4,691,839	-		PP_4152	0.87	+0.6
4,691,839	-		PP_4152	0.87	-1.5
4,691,915	-				-2.2
4,691,987	+				+0.1
4,691,988	-				-0.8
4,692,052	+				-1.1
4,692,084	+				+0.2
4,692,085	-				-0.4
4,692,243	+				-0.9
4,692,243	+				-0.4
4,692,321	+				-0.6
4,692,348	+				+0.1
4,692,349	-				-0.6
4,692,501	+		PP_4154	0.13	+0.0
4,692,501	+		PP_4154	0.13	+1.0
4,692,502	-		PP_4154	0.13	-3.2
4,692,626	+		PP_4154	0.17	-0.1
4,692,627	-		PP_4154	0.17	+0.3
4,692,887	+				+0.7