Strain Fitness in Pseudomonas putida KT2440 around PP_4002

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
4,510,076	-				-0.9
4,510,076	-				-0.5
4,510,076	-				+1.2
4,510,076	-				-0.9
4,510,076	-				+0.6
4,510,076	-				+0.9
4,510,076	-				+0.6
4,510,078	-				+0.0
4,510,078	-				-0.3
4,510,078	-				+0.6
4,510,078	-				-0.6
4,510,082	-				-1.6
4,510,082	-				+0.5
4,510,082	-				+0.1
4,510,082	-				-1.5
4,510,082	-				-0.3
4,510,152	-		PP_4001	0.16	-1.6
4,510,158	-		PP_4001	0.18	-0.1
4,510,158	-		PP_4001	0.18	+0.7
4,510,158	-		PP_4001	0.18	-0.4
4,510,160	-		PP_4001	0.18	+1.2
4,510,364	-		PP_4001	0.73	-0.0
4,510,364	-		PP_4001	0.73	-0.2
4,510,404	-		PP_4001	0.83	-0.1
4,510,422	-		PP_4001	0.88	+0.3
4,510,422	-		PP_4001	0.88	-0.6
4,510,422	-		PP_4001	0.88	+1.0
4,510,422	-		PP_4001	0.88	+0.7
4,510,563	+				+1.5
4,510,564	-				-0.4
4,510,564	-				+1.6
4,510,564	-				-3.3
4,510,566	+				+2.3
4,510,567	-				+0.1
4,510,567	-				-0.3
4,510,597	-		PP_4002	0.10	+0.2
4,510,597	-		PP_4002	0.10	+2.0
4,510,597	-		PP_4002	0.10	+0.1
4,510,597	-		PP_4002	0.10	-0.2
4,510,615	-		PP_4002	0.11	-1.2
4,510,639	-		PP_4002	0.13	+0.9
4,510,639	-		PP_4002	0.13	+0.9
4,510,761	+		PP_4002	0.22	+3.5
4,510,761	+		PP_4002	0.22	+1.0
4,510,762	-		PP_4002	0.23	-0.6
4,510,762	-		PP_4002	0.23	-2.7
4,510,794	+		PP_4002	0.25	-0.5
4,510,876	+		PP_4002	0.31	+0.7
4,510,941	+		PP_4002	0.36	+2.8
4,511,033	+		PP_4002	0.43	+1.5
4,511,033	+		PP_4002	0.43	-1.6
4,511,099	+		PP_4002	0.48	+2.1
4,511,099	+		PP_4002	0.48	+1.5
4,511,099	+		PP_4002	0.48	+1.7
4,511,099	+		PP_4002	0.48	+3.3
4,511,100	-		PP_4002	0.48	+0.7
4,511,100	-		PP_4002	0.48	-1.7
4,511,316	+		PP_4002	0.64	+1.5
4,511,316	+		PP_4002	0.64	+2.6
4,511,317	-		PP_4002	0.64	+0.0
4,511,317	-		PP_4002	0.64	+1.0
4,511,317	-		PP_4002	0.64	+0.5
4,511,317	-		PP_4002	0.64	+0.4
4,511,317	-		PP_4002	0.64	+0.4
4,511,317	-		PP_4002	0.64	+1.3
4,511,317	-		PP_4002	0.64	-0.4
4,511,410	-		PP_4002	0.71	+0.1
4,511,484	+		PP_4002	0.77	+1.6
4,511,484	+		PP_4002	0.77	+2.1
4,511,715	+				+1.8
4,511,716	-				+1.0
4,511,716	-				-0.6
4,511,803	-				-0.3