Strain Fitness in Pseudomonas putida KT2440 around PP_2947

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
3,350,801	-				+0.4
3,350,810	+				-0.6
3,350,810	+				-1.2
3,350,831	+				+0.2
3,350,832	-				+0.2
3,350,837	+				-0.3
3,350,837	+				+0.2
3,350,837	+				-0.7
3,350,873	+				+0.4
3,350,874	-				-0.3
3,350,874	-				-0.7
3,350,923	-				+0.4
3,351,073	+				+0.3
3,351,073	+				-1.0
3,351,119	+		PP_2946	0.13	-0.2
3,351,174	+		PP_2946	0.26	-0.1
3,351,180	+		PP_2946	0.28	-0.3
3,351,181	-		PP_2946	0.28	-0.3
3,351,181	-		PP_2946	0.28	+0.7
3,351,181	-		PP_2946	0.28	-0.3
3,351,181	-		PP_2946	0.28	-0.4
3,351,181	-		PP_2946	0.28	-0.8
3,351,219	-		PP_2946	0.37	-2.3
3,351,476	+				-0.3
3,351,476	+				+0.8
3,351,476	+				-0.3
3,351,476	+				-1.0
3,351,476	+				-1.2
3,351,477	-				+0.2
3,351,477	-				+0.6
3,351,552	+				-0.7
3,351,553	-				-1.0
3,351,553	-				-0.1
3,351,596	-				+0.6
3,351,604	-				-0.2
3,351,629	+				-0.0
3,351,630	-				+0.0
3,351,630	-				+0.3
3,351,630	-				+1.2
3,351,630	-				-1.5
3,351,704	-				-0.0
3,351,713	+				+0.0
3,351,875	+		PP_2947	0.37	-0.5
3,351,884	-		PP_2947	0.39	-0.8
3,351,997	+		PP_2947	0.69	-0.9
3,351,998	-		PP_2947	0.70	-2.5
3,351,998	-		PP_2947	0.70	-0.6
3,352,012	-		PP_2947	0.73	-1.0
3,352,075	+				+0.2
3,352,376	-				-0.6
3,352,376	-				-0.4
3,352,376	-				+0.4
3,352,445	+		PP_2948	0.14	-0.3
3,352,445	+		PP_2948	0.14	-0.8
3,352,445	+		PP_2948	0.14	-1.9
3,352,445	+		PP_2948	0.14	-1.2
3,352,446	-		PP_2948	0.14	-0.9
3,352,446	-		PP_2948	0.14	+0.1
3,352,446	-		PP_2948	0.14	+0.9
3,352,446	-		PP_2948	0.14	-0.5
3,352,480	-		PP_2948	0.16	-0.4
3,352,676	+		PP_2948	0.31	+0.0
3,352,677	-		PP_2948	0.31	-0.6
3,352,804	+		PP_2948	0.40	+0.9
3,352,804	+				+1.9
3,352,805	-		PP_2948	0.40	-0.4
3,352,805	-		PP_2948	0.40	-0.4
3,352,869	+		PP_2948	0.45	+0.1
3,352,890	+		PP_2948	0.46	-0.6
3,352,891	-		PP_2948	0.46	-1.0
3,352,903	+		PP_2948	0.47	+0.7
3,352,904	-		PP_2948	0.47	-0.8
3,352,907	+		PP_2948	0.47	+0.3
3,352,907	+		PP_2948	0.47	+0.6
3,352,908	-		PP_2948	0.47	-0.1
3,352,908	-		PP_2948	0.47	+0.4
3,352,908	-		PP_2948	0.47	-0.0
3,352,973	+		PP_2948	0.52	-0.0
3,352,973	+		PP_2948	0.52	-0.1
3,352,974	-		PP_2948	0.52	-1.2
3,352,974	-		PP_2948	0.52	+0.9
3,353,030	+		PP_2948	0.56	+0.9
3,353,031	-		PP_2948	0.56	+0.2