Strain Fitness in Pseudomonas putida KT2440 around PP_2929

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
3,330,079	-		PP_2928	0.36	+0.5
3,330,079	-		PP_2928	0.36	+1.3
3,330,079	-		PP_2928	0.36	+0.3
3,330,079	-		PP_2928	0.36	+1.0
3,330,079	-		PP_2928	0.36	+1.7
3,330,165	+		PP_2928	0.43	+0.7
3,330,166	-		PP_2928	0.43	+1.5
3,330,182	+		PP_2928	0.45	+0.7
3,330,202	+		PP_2928	0.46	-0.4
3,330,312	+		PP_2928	0.55	+1.8
3,330,347	-		PP_2928	0.58	+2.6
3,330,347	-				+0.1
3,330,396	+		PP_2928	0.62	+1.6
3,330,397	-		PP_2928	0.62	+0.4
3,330,443	-		PP_2928	0.66	+1.7
3,330,483	+		PP_2928	0.69	+0.8
3,330,484	-		PP_2928	0.69	+1.3
3,330,492	+		PP_2928	0.69	-0.1
3,330,562	+		PP_2928	0.75	+0.0
3,330,781	+				+1.1
3,330,853	+				+0.6
3,330,853	+				+0.2
3,330,888	+				+1.7
3,330,888	+				-0.5
3,330,906	-				-0.5
3,330,906	-				-0.3
3,330,923	+				+1.8
3,330,924	-				+3.3
3,331,139	+		PP_2929	0.21	+1.8
3,331,139	+		PP_2929	0.21	+0.2
3,331,140	-		PP_2929	0.21	+2.8
3,331,140	-		PP_2929	0.21	+1.3
3,331,140	-				+4.1
3,331,140	-		PP_2929	0.21	+1.4
3,331,143	+		PP_2929	0.22	+1.7
3,331,143	+		PP_2929	0.22	+0.6
3,331,143	+		PP_2929	0.22	+2.0
3,331,143	+		PP_2929	0.22	-0.2
3,331,144	-		PP_2929	0.22	+3.8
3,331,144	-		PP_2929	0.22	+2.9
3,331,144	-		PP_2929	0.22	+2.4
3,331,184	+		PP_2929	0.26	+1.3
3,331,185	-				+1.8
3,331,250	+		PP_2929	0.32	+0.7
3,331,250	+		PP_2929	0.32	+0.1
3,331,320	-		PP_2929	0.38	+1.1
3,331,376	-		PP_2929	0.43	-1.4
3,331,382	+		PP_2929	0.44	+1.1
3,331,382	+		PP_2929	0.44	+2.2
3,331,383	-		PP_2929	0.44	+2.3
3,331,616	+		PP_2929	0.65	+1.0
3,331,770	+		PP_2929	0.79	+1.7
3,331,771	-		PP_2929	0.79	-2.0
3,331,772	+		PP_2929	0.79	-0.2
3,331,772	+		PP_2929	0.79	+1.0
3,331,773	-		PP_2929	0.79	+3.0
3,331,773	-		PP_2929	0.79	+2.5
3,331,773	-		PP_2929	0.79	+3.1
3,331,839	+		PP_2929	0.85	+1.8
3,331,850	+		PP_2929	0.86	+2.2
3,331,850	+		PP_2929	0.86	+0.6
3,331,850	+		PP_2929	0.86	+0.1
3,331,850	+		PP_2929	0.86	+1.8
3,331,851	-		PP_2929	0.86	-0.0
3,331,851	-		PP_2929	0.86	+2.5
3,331,851	-		PP_2929	0.86	+3.1
3,331,851	-		PP_2929	0.86	+3.0
3,331,851	-		PP_2929	0.86	+2.2
3,331,851	-		PP_2929	0.86	+2.1
3,331,935	-				-0.6
3,331,982	+				+1.1
3,331,982	+				+1.5
3,331,983	-				+1.7
3,331,983	-				+2.6
3,331,983	-				+2.0
3,332,004	-				+2.0
3,332,004	-				+4.1
3,332,104	-				-0.3
3,332,135	+				-0.4
3,332,136	-				-1.0
3,332,139	-				-1.9
3,332,162	+				+0.3
3,332,162	+				-0.7
3,332,163	-				+0.2
3,332,293	+		PP_2930	0.12	+0.4
3,332,293	+		PP_2930	0.12	+1.0
3,332,293	+		PP_2930	0.12	-0.7
3,332,293	+		PP_2930	0.12	+0.1
3,332,293	+		PP_2930	0.12	+1.3
3,332,294	-		PP_2930	0.12	-0.9
3,332,294	-		PP_2930	0.12	-3.6
3,332,294	-		PP_2930	0.12	+0.1
3,332,294	-		PP_2930	0.12	-0.2
3,332,896	+		PP_2930	0.77	-1.6
3,332,983	-		PP_2930	0.87	+0.0