Strain Fitness in Pseudomonas putida KT2440 around PP_2428

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
2,774,843	+		PP_5521	0.51	-0.4
2,774,851	+		PP_5521	0.51	+1.2
2,774,851	+		PP_5521	0.51	-0.8
2,774,874	-		PP_5521	0.53	+0.3
2,775,118	+		PP_5521	0.71	+0.2
2,775,142	-		PP_5521	0.73	-0.0
2,775,405	+				+1.5
2,775,405	+				+0.9
2,775,427	-				-0.7
2,775,527	+				+0.8
2,775,527	+				+0.2
2,775,528	-				-1.2
2,775,867	+		PP_2428	0.17	-0.1
2,775,868	-		PP_2428	0.17	-0.2
2,775,868	-		PP_2428	0.17	-0.5
2,775,868	-		PP_2428	0.17	-1.7
2,776,136	+		PP_2428	0.39	-0.9
2,776,137	-		PP_2428	0.39	-0.5
2,776,337	+		PP_2428	0.56	-1.0
2,776,337	+		PP_2428	0.56	+0.5
2,776,337	+		PP_2428	0.56	-0.7
2,776,338	-		PP_2428	0.56	-1.0
2,776,338	-		PP_2428	0.56	-1.0
2,776,341	+		PP_2428	0.56	+0.0
2,776,342	-		PP_2428	0.56	-0.4
2,776,342	-		PP_2428	0.56	-0.8
2,776,383	+		PP_2428	0.59	+1.8
2,776,384	-		PP_2428	0.59	+0.3
2,776,389	+				+0.4
2,776,389	+		PP_2428	0.60	-0.4
2,776,389	+		PP_2428	0.60	-0.9
2,776,389	+		PP_2428	0.60	+0.2
2,776,390	-		PP_2428	0.60	-1.0
2,776,390	-		PP_2428	0.60	-0.0
2,776,390	-		PP_2428	0.60	-1.0
2,776,390	-		PP_2428	0.60	+0.2
2,776,392	-		PP_2428	0.60	-1.0
2,776,414	+		PP_2428	0.62	-1.8
2,776,414	+		PP_2428	0.62	-0.6
2,776,415	-		PP_2428	0.62	+0.9
2,776,532	-		PP_2428	0.72	-1.4
2,776,594	-		PP_2428	0.77	-1.7
2,776,722	+		PP_2428	0.87	-0.9
2,776,722	+		PP_2428	0.87	-1.9
2,776,722	+		PP_2428	0.87	-0.3
2,776,832	-				-0.3
2,777,115	+		PP_2429	0.33	+1.8
2,777,325	+		PP_2429	0.69	-0.6
2,777,607	+				-1.5
2,777,733	+		PP_2430	0.21	+0.5
2,777,733	+		PP_2430	0.21	-1.9